PPR83_ARATH
ID PPR83_ARATH Reviewed; 611 AA.
AC Q9FXA9;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 03-AUG-2022, entry version 111.
DE RecName: Full=Putative pentatricopeptide repeat-containing protein At1g56570;
GN Name=PCMP-E64; OrderedLocusNames=At1g56570; ORFNames=F25P12.98;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC009323; AAG09106.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE33410.1; -; Genomic_DNA.
DR EMBL; CP002684; ANM60848.1; -; Genomic_DNA.
DR PIR; D96607; D96607.
DR RefSeq; NP_001319256.1; NM_001333790.1.
DR RefSeq; NP_176050.1; NM_104534.2.
DR AlphaFoldDB; Q9FXA9; -.
DR SMR; Q9FXA9; -.
DR STRING; 3702.AT1G56570.1; -.
DR iPTMnet; Q9FXA9; -.
DR PaxDb; Q9FXA9; -.
DR PRIDE; Q9FXA9; -.
DR ProteomicsDB; 234794; -.
DR EnsemblPlants; AT1G56570.1; AT1G56570.1; AT1G56570.
DR EnsemblPlants; AT1G56570.2; AT1G56570.2; AT1G56570.
DR GeneID; 842111; -.
DR Gramene; AT1G56570.1; AT1G56570.1; AT1G56570.
DR Gramene; AT1G56570.2; AT1G56570.2; AT1G56570.
DR KEGG; ath:AT1G56570; -.
DR Araport; AT1G56570; -.
DR TAIR; locus:2027589; AT1G56570.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_0_1_1; -.
DR InParanoid; Q9FXA9; -.
DR OMA; ITGFTHR; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9FXA9; -.
DR PRO; PR:Q9FXA9; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9FXA9; baseline and differential.
DR Genevisible; Q9FXA9; AT.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0005739; C:mitochondrion; IDA:TAIR.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0050832; P:defense response to fungus; IMP:TAIR.
DR GO; GO:0009737; P:response to abscisic acid; IMP:TAIR.
DR GO; GO:0009749; P:response to glucose; IMP:TAIR.
DR GO; GO:0009651; P:response to salt stress; IMP:TAIR.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 5.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 1.
DR TIGRFAMs; TIGR00756; PPR; 6.
DR PROSITE; PS51375; PPR; 10.
PE 3: Inferred from homology;
KW Reference proteome; Repeat.
FT CHAIN 1..611
FT /note="Putative pentatricopeptide repeat-containing protein
FT At1g56570"
FT /id="PRO_0000342824"
FT REPEAT 44..74
FT /note="PPR 1"
FT REPEAT 75..109
FT /note="PPR 2"
FT REPEAT 110..144
FT /note="PPR 3"
FT REPEAT 145..176
FT /note="PPR 4"
FT REPEAT 177..211
FT /note="PPR 5"
FT REPEAT 212..246
FT /note="PPR 6"
FT REPEAT 247..281
FT /note="PPR 7"
FT REPEAT 282..311
FT /note="PPR 8"
FT REPEAT 312..346
FT /note="PPR 9"
FT REPEAT 347..377
FT /note="PPR 10"
FT REPEAT 379..413
FT /note="PPR 11"
FT REPEAT 414..444
FT /note="PPR 12"
FT REPEAT 450..480
FT /note="PPR 13"
FT REGION 485..561
FT /note="Type E motif"
FT REGION 562..592
FT /note="Type E(+) motif"
SQ SEQUENCE 611 AA; 68278 MW; CFBCFD3B12133168 CRC64;
MSITKLARSN AFKPIPNFVR SSLRNAGVES SQNTEYPPYK PKKHHILATN LIVSYFEKGL
VEEARSLFDE MPDRDVVAWT AMITGYASSN YNARAWECFH EMVKQGTSPN EFTLSSVLKS
CRNMKVLAYG ALVHGVVVKL GMEGSLYVDN AMMNMYATCS VTMEAACLIF RDIKVKNDVT
WTTLITGFTH LGDGIGGLKM YKQMLLENAE VTPYCITIAV RASASIDSVT TGKQIHASVI
KRGFQSNLPV MNSILDLYCR CGYLSEAKHY FHEMEDKDLI TWNTLISELE RSDSSEALLM
FQRFESQGFV PNCYTFTSLV AACANIAALN CGQQLHGRIF RRGFNKNVEL ANALIDMYAK
CGNIPDSQRV FGEIVDRRNL VSWTSMMIGY GSHGYGAEAV ELFDKMVSSG IRPDRIVFMA
VLSACRHAGL VEKGLKYFNV MESEYGINPD RDIYNCVVDL LGRAGKIGEA YELVERMPFK
PDESTWGAIL GACKAHKHNG LISRLAARKV MELKPKMVGT YVMLSYIYAA EGKWVDFARV
RKMMRMMGNK KEAGMSWILV ENQVFSFAVS DKMCPNASSV YSVLGLLIEE TREAGYVPEL
DSLVNDQEVG T
