PPR84_ARATH
ID PPR84_ARATH Reviewed; 704 AA.
AC Q9FXB9;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 25-MAY-2022, entry version 113.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g56690, mitochondrial;
DE Flags: Precursor;
GN Name=PCMP-H69; OrderedLocusNames=At1g56690; ORFNames=F25P12.87;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
RN [4]
RP IDENTIFICATION BY MASS SPECTROMETRY, AND CLEAVAGE OF TRANSIT PEPTIDE AFTER
RP TYR-12.
RX PubMed=25732537; DOI=10.1093/jxb/erv064;
RA Carrie C., Venne A.S., Zahedi R.P., Soll J.;
RT "Identification of cleavage sites and substrate proteins for two
RT mitochondrial intermediate peptidases in Arabidopsis thaliana.";
RL J. Exp. Bot. 66:2691-2708(2015).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305|PubMed:25732537}.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC009323; AAG09095.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE33423.1; -; Genomic_DNA.
DR PIR; G96608; G96608.
DR RefSeq; NP_176062.1; NM_104546.2.
DR AlphaFoldDB; Q9FXB9; -.
DR SMR; Q9FXB9; -.
DR STRING; 3702.AT1G56690.1; -.
DR PaxDb; Q9FXB9; -.
DR PRIDE; Q9FXB9; -.
DR ProteomicsDB; 226468; -.
DR EnsemblPlants; AT1G56690.1; AT1G56690.1; AT1G56690.
DR GeneID; 842125; -.
DR Gramene; AT1G56690.1; AT1G56690.1; AT1G56690.
DR KEGG; ath:AT1G56690; -.
DR Araport; AT1G56690; -.
DR TAIR; locus:2027554; AT1G56690.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_0_1; -.
DR InParanoid; Q9FXB9; -.
DR OMA; EKKVHMF; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9FXB9; -.
DR PRO; PR:Q9FXB9; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9FXB9; baseline and differential.
DR Genevisible; Q9FXB9; AT.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF01535; PPR; 10.
DR Pfam; PF13041; PPR_2; 1.
DR TIGRFAMs; TIGR00756; PPR; 9.
DR PROSITE; PS51375; PPR; 15.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..12
FT /note="Mitochondrion"
FT /evidence="ECO:0000269|PubMed:25732537"
FT CHAIN 13..704
FT /note="Pentatricopeptide repeat-containing protein
FT At1g56690, mitochondrial"
FT /id="PRO_0000342825"
FT REPEAT 16..46
FT /note="PPR 1"
FT REPEAT 47..81
FT /note="PPR 2"
FT REPEAT 82..108
FT /note="PPR 3"
FT REPEAT 109..143
FT /note="PPR 4"
FT REPEAT 144..170
FT /note="PPR 5"
FT REPEAT 171..205
FT /note="PPR 6"
FT REPEAT 206..232
FT /note="PPR 7"
FT REPEAT 233..267
FT /note="PPR 8"
FT REPEAT 268..294
FT /note="PPR 9"
FT REPEAT 295..329
FT /note="PPR 10"
FT REPEAT 330..364
FT /note="PPR 11"
FT REPEAT 365..395
FT /note="PPR 12"
FT REPEAT 396..430
FT /note="PPR 13"
FT REPEAT 431..465
FT /note="PPR 14"
FT REPEAT 467..497
FT /note="PPR 15"
FT REGION 502..577
FT /note="Type E motif"
FT REGION 578..609
FT /note="Type E(+) motif"
FT REGION 610..704
FT /note="Type DYW motif"
SQ SEQUENCE 704 AA; 79705 MW; 9E75E91DC5901C9E CRC64;
MKRLKLILRR TYLTSTGVNC SFEISRLSRI GKINEARKFF DSLQFKAIGS WNSIVSGYFS
NGLPKEARQL FDEMSERNVV SWNGLVSGYI KNRMIVEARN VFELMPERNV VSWTAMVKGY
MQEGMVGEAE SLFWRMPERN EVSWTVMFGG LIDDGRIDKA RKLYDMMPVK DVVASTNMIG
GLCREGRVDE ARLIFDEMRE RNVVTWTTMI TGYRQNNRVD VARKLFEVMP EKTEVSWTSM
LLGYTLSGRI EDAEEFFEVM PMKPVIACNA MIVGFGEVGE ISKARRVFDL MEDRDNATWR
GMIKAYERKG FELEALDLFA QMQKQGVRPS FPSLISILSV CATLASLQYG RQVHAHLVRC
QFDDDVYVAS VLMTMYVKCG ELVKAKLVFD RFSSKDIIMW NSIISGYASH GLGEEALKIF
HEMPSSGTMP NKVTLIAILT ACSYAGKLEE GLEIFESMES KFCVTPTVEH YSCTVDMLGR
AGQVDKAMEL IESMTIKPDA TVWGALLGAC KTHSRLDLAE VAAKKLFENE PDNAGTYVLL
SSINASRSKW GDVAVVRKNM RTNNVSKFPG CSWIEVGKKV HMFTRGGIKN HPEQAMILMM
LEKTDGLLRE AGYSPDCSHV LHDVDEEEKV DSLSRHSERL AVAYGLLKLP EGVPIRVMKN
LRVCGDCHAA IKLISKVTER EIILRDANRF HHFNNGECSC RDYW
