PPR86_ARATH
ID PPR86_ARATH Reviewed; 491 AA.
AC O22714;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-JAN-1998, sequence version 1.
DT 03-AUG-2022, entry version 122.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g60770;
GN OrderedLocusNames=At1g60770; ORFNames=F8A5.28;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC002292; AAB71963.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE33730.1; -; Genomic_DNA.
DR EMBL; BT002876; AAO22693.1; -; mRNA.
DR EMBL; BT004401; AAO42395.1; -; mRNA.
DR PIR; B96633; B96633.
DR RefSeq; NP_176276.1; NM_104760.2.
DR PDB; 6XYW; EM; 3.86 A; AO=1-491.
DR PDBsum; 6XYW; -.
DR AlphaFoldDB; O22714; -.
DR SMR; O22714; -.
DR BioGRID; 27595; 3.
DR IntAct; O22714; 1.
DR STRING; 3702.AT1G60770.1; -.
DR PaxDb; O22714; -.
DR PRIDE; O22714; -.
DR ProteomicsDB; 226494; -.
DR DNASU; 842371; -.
DR EnsemblPlants; AT1G60770.1; AT1G60770.1; AT1G60770.
DR GeneID; 842371; -.
DR Gramene; AT1G60770.1; AT1G60770.1; AT1G60770.
DR KEGG; ath:AT1G60770; -.
DR Araport; AT1G60770; -.
DR TAIR; locus:2036586; AT1G60770.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_019802_3_1_1; -.
DR InParanoid; O22714; -.
DR OMA; HFEQEKD; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; O22714; -.
DR PRO; PR:O22714; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; O22714; baseline and differential.
DR Genevisible; O22714; AT.
DR GO; GO:0005739; C:mitochondrion; HDA:TAIR.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 4.
DR Pfam; PF13041; PPR_2; 1.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 3.
DR PROSITE; PS51375; PPR; 8.
PE 1: Evidence at protein level;
KW 3D-structure; Reference proteome; Repeat.
FT CHAIN 1..491
FT /note="Pentatricopeptide repeat-containing protein
FT At1g60770"
FT /id="PRO_0000342827"
FT REPEAT 122..156
FT /note="PPR 1"
FT REPEAT 157..191
FT /note="PPR 2"
FT REPEAT 192..226
FT /note="PPR 3"
FT REPEAT 228..262
FT /note="PPR 4"
FT REPEAT 263..293
FT /note="PPR 5"
FT REPEAT 298..328
FT /note="PPR 6"
FT REPEAT 333..367
FT /note="PPR 7"
FT REPEAT 368..402
FT /note="PPR 8"
SQ SEQUENCE 491 AA; 55905 MW; C8525023CADE16E5 CRC64;
MAMRHLSRSR DVTKRSTKKY IEEPLYNRLF KDGGTEVKVR QQLNQFLKGT KHVFKWEVGD
TIKKLRNRGL YYPALKLSEV MEERGMNKTV SDQAIHLDLV AKAREITAGE NYFVDLPETS
KTELTYGSLL NCYCKELLTE KAEGLLNKMK ELNITPSSMS YNSLMTLYTK TGETEKVPAM
IQELKAENVM PDSYTYNVWM RALAATNDIS GVERVIEEMN RDGRVAPDWT TYSNMASIYV
DAGLSQKAEK ALQELEMKNT QRDFTAYQFL ITLYGRLGKL TEVYRIWRSL RLAIPKTSNV
AYLNMIQVLV KLNDLPGAET LFKEWQANCS TYDIRIVNVL IGAYAQEGLI QKANELKEKA
PRRGGKLNAK TWEIFMDYYV KSGDMARALE CMSKAVSIGK GDGGKWLPSP ETVRALMSYF
EQKKDVNGAE NLLEILKNGT DNIGAEIFEP LIRTYAAAGK SHPAMRRRLK MENVEVNEAT
KKLLDEVSQD V
