PPR88_ARATH
ID PPR88_ARATH Reviewed; 656 AA.
AC O04590;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-JUL-1997, sequence version 1.
DT 25-MAY-2022, entry version 128.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g62260, mitochondrial;
DE Flags: Precursor;
GN Name=PCMP-E10; OrderedLocusNames=At1g62260; ORFNames=F19K23.18;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC000375; AAB60776.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE33942.1; -; Genomic_DNA.
DR PIR; B96649; B96649.
DR RefSeq; NP_176416.1; NM_104906.2.
DR AlphaFoldDB; O04590; -.
DR SMR; O04590; -.
DR BioGRID; 27744; 3.
DR STRING; 3702.AT1G62260.1; -.
DR PaxDb; O04590; -.
DR PRIDE; O04590; -.
DR ProteomicsDB; 226334; -.
DR EnsemblPlants; AT1G62260.1; AT1G62260.1; AT1G62260.
DR GeneID; 842523; -.
DR Gramene; AT1G62260.1; AT1G62260.1; AT1G62260.
DR KEGG; ath:AT1G62260; -.
DR Araport; AT1G62260; -.
DR TAIR; locus:2018092; AT1G62260.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_30_5_1; -.
DR InParanoid; O04590; -.
DR OMA; FSKMPNP; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; O04590; -.
DR PRO; PR:O04590; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; O04590; baseline and differential.
DR Genevisible; O04590; AT.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0016554; P:cytidine to uridine editing; IMP:TAIR.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR045215; PPR_prot_plant.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR PANTHER; PTHR24015; PTHR24015; 1.
DR Pfam; PF01535; PPR; 4.
DR Pfam; PF12854; PPR_1; 2.
DR Pfam; PF13041; PPR_2; 5.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 11.
DR PROSITE; PS51375; PPR; 14.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..?
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN ?..656
FT /note="Pentatricopeptide repeat-containing protein
FT At1g62260, mitochondrial"
FT /id="PRO_0000342829"
FT REPEAT 70..104
FT /note="PPR 1"
FT REPEAT 105..134
FT /note="PPR 2"
FT REPEAT 135..169
FT /note="PPR 3"
FT REPEAT 170..200
FT /note="PPR 4"
FT REPEAT 203..227
FT /note="PPR 5"
FT REPEAT 234..264
FT /note="PPR 6"
FT REPEAT 280..310
FT /note="PPR 7"
FT REPEAT 311..345
FT /note="PPR 8"
FT REPEAT 346..372
FT /note="PPR 9"
FT REPEAT 373..407
FT /note="PPR 10"
FT REPEAT 408..438
FT /note="PPR 11"
FT REPEAT 442..472
FT /note="PPR 12"
FT REPEAT 474..508
FT /note="PPR 13"
FT REPEAT 509..544
FT /note="PPR 14"
FT REPEAT 545..575
FT /note="PPR 15"
FT REGION 580..655
FT /note="Type E motif"
SQ SEQUENCE 656 AA; 74169 MW; C7351232E1BD541E CRC64;
MIRSRSVLLI FRKVLYQSSC LKCLLCANSF STSVSSSLGF RATNKELNQM IRSGYIAEAR
DIFEKLEARN TVTWNTMISG YVKRREMNQA RKLFDVMPKR DVVTWNTMIS GYVSCGGIRF
LEEARKLFDE MPSRDSFSWN TMISGYAKNR RIGEALLLFE KMPERNAVSW SAMITGFCQN
GEVDSAVVLF RKMPVKDSSP LCALVAGLIK NERLSEAAWV LGQYGSLVSG REDLVYAYNT
LIVGYGQRGQ VEAARCLFDQ IPDLCGDDHG GEFRERFCKN VVSWNSMIKA YLKVGDVVSA
RLLFDQMKDR DTISWNTMID GYVHVSRMED AFALFSEMPN RDAHSWNMMV SGYASVGNVE
LARHYFEKTP EKHTVSWNSI IAAYEKNKDY KEAVDLFIRM NIEGEKPDPH TLTSLLSAST
GLVNLRLGMQ MHQIVVKTVI PDVPVHNALI TMYSRCGEIM ESRRIFDEMK LKREVITWNA
MIGGYAFHGN ASEALNLFGS MKSNGIYPSH ITFVSVLNAC AHAGLVDEAK AQFVSMMSVY
KIEPQMEHYS SLVNVTSGQG QFEEAMYIIT SMPFEPDKTV WGALLDACRI YNNVGLAHVA
AEAMSRLEPE SSTPYVLLYN MYADMGLWDE ASQVRMNMES KRIKKERGSS WVDSST
