PPR8_ARATH
ID PPR8_ARATH Reviewed; 609 AA.
AC Q9LR69;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 109.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g03540;
GN Name=PCMP-E4; OrderedLocusNames=At1g03540; ORFNames=F21B7.16;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=17147637; DOI=10.1111/j.1467-7652.2006.00183.x;
RA Underwood B.A., Vanderhaeghen R., Whitford R., Town C.D., Hilson P.;
RT "Simultaneous high-throughput recombinational cloning of open reading
RT frames in closed and open configurations.";
RL Plant Biotechnol. J. 4:317-324(2006).
RN [4]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [5]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC002560; AAF86514.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE27584.1; -; Genomic_DNA.
DR EMBL; DQ446225; ABE65596.1; -; mRNA.
DR PIR; T00904; T00904.
DR RefSeq; NP_171853.1; NM_100236.2.
DR AlphaFoldDB; Q9LR69; -.
DR SMR; Q9LR69; -.
DR STRING; 3702.AT1G03540.1; -.
DR PaxDb; Q9LR69; -.
DR PRIDE; Q9LR69; -.
DR ProteomicsDB; 225984; -.
DR EnsemblPlants; AT1G03540.1; AT1G03540.1; AT1G03540.
DR GeneID; 839466; -.
DR Gramene; AT1G03540.1; AT1G03540.1; AT1G03540.
DR KEGG; ath:AT1G03540; -.
DR Araport; AT1G03540; -.
DR TAIR; locus:2020703; AT1G03540.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_10_1; -.
DR InParanoid; Q9LR69; -.
DR OMA; AICWTSV; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9LR69; -.
DR PRO; PR:Q9LR69; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9LR69; baseline and differential.
DR Genevisible; Q9LR69; AT.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 4.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR045215; PPR_prot_plant.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR PANTHER; PTHR24015; PTHR24015; 1.
DR Pfam; PF01535; PPR; 4.
DR Pfam; PF13041; PPR_2; 3.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 6.
DR PROSITE; PS51375; PPR; 14.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..609
FT /note="Pentatricopeptide repeat-containing protein
FT At1g03540"
FT /id="PRO_0000342749"
FT REPEAT 25..59
FT /note="PPR 1"
FT REPEAT 60..94
FT /note="PPR 2"
FT REPEAT 95..126
FT /note="PPR 3"
FT REPEAT 127..161
FT /note="PPR 4"
FT REPEAT 162..196
FT /note="PPR 5"
FT REPEAT 197..227
FT /note="PPR 6"
FT REPEAT 228..263
FT /note="PPR 7"
FT REPEAT 264..298
FT /note="PPR 8"
FT REPEAT 299..329
FT /note="PPR 9"
FT REPEAT 330..364
FT /note="PPR 10"
FT REPEAT 396..426
FT /note="PPR 11"
FT REPEAT 427..461
FT /note="PPR 12"
FT REPEAT 462..497
FT /note="PPR 13"
FT REPEAT 498..532
FT /note="PPR 14"
FT REGION 533..609
FT /note="Type E motif"
SQ SEQUENCE 609 AA; 67402 MW; 3B04DC4A544ECA92 CRC64;
MNLIILKRHF SQHASLCLTP SISSSAPTKQ SRILELCKLG QLTEAIRILN STHSSEIPAT
PKLYASLLQT CNKVFSFIHG IQFHAHVVKS GLETDRNVGN SLLSLYFKLG PGMRETRRVF
DGRFVKDAIS WTSMMSGYVT GKEHVKALEV FVEMVSFGLD ANEFTLSSAV KACSELGEVR
LGRCFHGVVI THGFEWNHFI SSTLAYLYGV NREPVDARRV FDEMPEPDVI CWTAVLSAFS
KNDLYEEALG LFYAMHRGKG LVPDGSTFGT VLTACGNLRR LKQGKEIHGK LITNGIGSNV
VVESSLLDMY GKCGSVREAR QVFNGMSKKN SVSWSALLGG YCQNGEHEKA IEIFREMEEK
DLYCFGTVLK ACAGLAAVRL GKEIHGQYVR RGCFGNVIVE SALIDLYGKS GCIDSASRVY
SKMSIRNMIT WNAMLSALAQ NGRGEEAVSF FNDMVKKGIK PDYISFIAIL TACGHTGMVD
EGRNYFVLMA KSYGIKPGTE HYSCMIDLLG RAGLFEEAEN LLERAECRND ASLWGVLLGP
CAANADASRV AERIAKRMME LEPKYHMSYV LLSNMYKAIG RHGDALNIRK LMVRRGVAKT
VGQSWIDAH
