PPR90_ARATH
ID PPR90_ARATH Reviewed; 634 AA.
AC Q9SXD8; Q8L792;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 03-AUG-2022, entry version 121.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g62590;
GN OrderedLocusNames=At1g62590; ORFNames=T3P18.15;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAM97065.1; Type=Frameshift; Evidence={ECO:0000305};
CC Sequence=BAD95323.1; Type=Frameshift; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC005698; AAD43616.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE33981.1; -; Genomic_DNA.
DR EMBL; CP002684; ANM60557.1; -; Genomic_DNA.
DR EMBL; AY136399; AAM97065.1; ALT_FRAME; mRNA.
DR EMBL; AK221654; BAD95323.1; ALT_FRAME; mRNA.
DR PIR; F96651; F96651.
DR RefSeq; NP_001322835.1; NM_001334041.1.
DR RefSeq; NP_176447.1; NM_104937.3.
DR AlphaFoldDB; Q9SXD8; -.
DR SMR; Q9SXD8; -.
DR STRING; 3702.AT1G62590.1; -.
DR PaxDb; Q9SXD8; -.
DR PRIDE; Q9SXD8; -.
DR ProteomicsDB; 234799; -.
DR EnsemblPlants; AT1G62590.1; AT1G62590.1; AT1G62590.
DR EnsemblPlants; AT1G62590.2; AT1G62590.2; AT1G62590.
DR GeneID; 842556; -.
DR Gramene; AT1G62590.1; AT1G62590.1; AT1G62590.
DR Gramene; AT1G62590.2; AT1G62590.2; AT1G62590.
DR KEGG; ath:AT1G62590; -.
DR Araport; AT1G62590; -.
DR TAIR; locus:2203916; AT1G62590.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_0_1; -.
DR InParanoid; Q9SXD8; -.
DR OMA; GYCKVKM; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9SXD8; -.
DR PRO; PR:Q9SXD8; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9SXD8; baseline and differential.
DR Genevisible; Q9SXD8; AT.
DR GO; GO:0004016; F:adenylate cyclase activity; IDA:TAIR.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 1.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 6.
DR TIGRFAMs; TIGR00756; PPR; 14.
DR PROSITE; PS51375; PPR; 15.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..634
FT /note="Pentatricopeptide repeat-containing protein
FT At1g62590"
FT /id="PRO_0000342831"
FT REPEAT 49..83
FT /note="PPR 1"
FT REPEAT 84..118
FT /note="PPR 2"
FT REPEAT 119..153
FT /note="PPR 3"
FT REPEAT 154..188
FT /note="PPR 4"
FT REPEAT 189..223
FT /note="PPR 5"
FT REPEAT 224..258
FT /note="PPR 6"
FT REPEAT 259..293
FT /note="PPR 7"
FT REPEAT 294..328
FT /note="PPR 8"
FT REPEAT 329..363
FT /note="PPR 9"
FT REPEAT 364..398
FT /note="PPR 10"
FT REPEAT 399..433
FT /note="PPR 11"
FT REPEAT 434..468
FT /note="PPR 12"
FT REPEAT 469..503
FT /note="PPR 13"
FT REPEAT 504..538
FT /note="PPR 14"
FT REPEAT 539..573
FT /note="PPR 15"
FT REPEAT 574..608
FT /note="PPR 16"
SQ SEQUENCE 634 AA; 70862 MW; D55D3826D6C33822 CRC64;
MRISISSVVS STTSRIVHRN LQGKGNPRIA PSSIDLCGMC YWGRAFSSGS GDYREILRNG
LHDMKLDDAI GLFGGMVKSR PLPSIVEFNK LLSAIAKMKK FDVVISLGEK MQRLEIVHGL
YTYNILINCF CRRSQISLAL ALLGKMMKLG YEPSIVTLSS LLNGYCHGKR ISDAVALVDQ
MVEMGYRPDT ITFTTLIHGL FLHNKASEAV ALVDRMVQRG CQPNLVTYGV VVNGLCKRGD
TDLALNLLNK MEAAKIEADV VIFNTIIDSL CKYRHVDDAL NLFKEMETKG IRPNVVTYSS
LISCLCSYGR WSDASQLLSD MIEKKINPNL VTFNALIDAF VKEGKFVEAE KLYDDMIKRS
IDPDIFTYNS LVNGFCMHDR LDKAKQMFEF MVSKDCFPDV VTYNTLIKGF CKSKRVEDGT
ELFREMSHRG LVGDTVTYTT LIQGLFHDGD CDNAQKVFKQ MVSDGVPPDI MTYSILLDGL
CNNGKLEKAL EVFDYMQKSE IKLDIYIYTT MIEGMCKAGK VDDGWDLFCS LSLKGVKPNV
VTYNTMISGL CSKRLLQEAY ALLKKMKEDG PLPNSGTYNT LIRAHLRDGD KAASAELIRE
MRSCRFVGDA STIGLVANML HDGRLDKSFL DMLS
