PPR91_ARATH
ID PPR91_ARATH Reviewed; 630 AA.
AC Q9SXD1; Q9SI82;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-JUL-2008, sequence version 2.
DT 25-MAY-2022, entry version 108.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g62670, mitochondrial;
DE Flags: Precursor;
GN OrderedLocusNames=At1g62670; ORFNames=F23N19.4, T3P18.22;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAD43623.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC Sequence=AAF19552.1; Type=Erroneous gene model prediction; Note=The predicted gene has been split into 2 genes: At1g62670 and At1g62680.; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC005698; AAD43623.1; ALT_INIT; Genomic_DNA.
DR EMBL; AC007190; AAF19552.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE33992.1; -; Genomic_DNA.
DR EMBL; CP002684; ANM59187.1; -; Genomic_DNA.
DR RefSeq; NP_001319294.1; NM_001334047.1.
DR RefSeq; NP_176454.1; NM_104944.1.
DR AlphaFoldDB; Q9SXD1; -.
DR SMR; Q9SXD1; -.
DR BioGRID; 27785; 1.
DR STRING; 3702.AT1G62670.1; -.
DR PaxDb; Q9SXD1; -.
DR PRIDE; Q9SXD1; -.
DR ProteomicsDB; 225985; -.
DR EnsemblPlants; AT1G62670.1; AT1G62670.1; AT1G62670.
DR EnsemblPlants; AT1G62670.2; AT1G62670.2; AT1G62670.
DR GeneID; 842564; -.
DR Gramene; AT1G62670.1; AT1G62670.1; AT1G62670.
DR Gramene; AT1G62670.2; AT1G62670.2; AT1G62670.
DR KEGG; ath:AT1G62670; -.
DR Araport; AT1G62670; -.
DR TAIR; locus:2026192; AT1G62670.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_12_1; -.
DR InParanoid; Q9SXD1; -.
DR OMA; CKQGHTQ; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9SXD1; -.
DR PRO; PR:Q9SXD1; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9SXD1; baseline and differential.
DR Genevisible; Q9SXD1; AT.
DR GO; GO:0005739; C:mitochondrion; IDA:TAIR.
DR GO; GO:0003723; F:RNA binding; IDA:TAIR.
DR GO; GO:0000966; P:RNA 5'-end processing; IMP:TAIR.
DR Gene3D; 1.25.40.10; -; 6.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 7.
DR TIGRFAMs; TIGR00756; PPR; 14.
DR PROSITE; PS51375; PPR; 16.
PE 3: Inferred from homology;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..22
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 23..630
FT /note="Pentatricopeptide repeat-containing protein
FT At1g62670, mitochondrial"
FT /id="PRO_0000342832"
FT REPEAT 44..79
FT /note="PPR 1"
FT REPEAT 80..114
FT /note="PPR 2"
FT REPEAT 115..149
FT /note="PPR 3"
FT REPEAT 150..184
FT /note="PPR 4"
FT REPEAT 185..219
FT /note="PPR 5"
FT REPEAT 220..254
FT /note="PPR 6"
FT REPEAT 255..289
FT /note="PPR 7"
FT REPEAT 290..324
FT /note="PPR 8"
FT REPEAT 325..359
FT /note="PPR 9"
FT REPEAT 360..394
FT /note="PPR 10"
FT REPEAT 395..429
FT /note="PPR 11"
FT REPEAT 430..464
FT /note="PPR 12"
FT REPEAT 465..499
FT /note="PPR 13"
FT REPEAT 500..534
FT /note="PPR 14"
FT REPEAT 535..569
FT /note="PPR 15"
FT REPEAT 570..604
FT /note="PPR 16"
SQ SEQUENCE 630 AA; 70846 MW; 440298C15B6B7DFB CRC64;
MRISFAIAST AKRFVHRSLV VRGNAATVSP SFSFFWRRAF SGKTSYDYRE KLSRNGLSEL
KLDDAVALFG EMVKSRPFPS IIEFSKLLSA IAKMNKFDVV ISLGEQMQNL GIPHNHYTYS
ILINCFCRRS QLPLALAVLG KMMKLGYEPN IVTLSSLLNG YCHSKRISEA VALVDQMFVT
GYQPNTVTFN TLIHGLFLHN KASEAMALID RMVAKGCQPD LVTYGVVVNG LCKRGDTDLA
FNLLNKMEQG KLEPGVLIYN TIIDGLCKYK HMDDALNLFK EMETKGIRPN VVTYSSLISC
LCNYGRWSDA SRLLSDMIER KINPDVFTFS ALIDAFVKEG KLVEAEKLYD EMVKRSIDPS
IVTYSSLING FCMHDRLDEA KQMFEFMVSK HCFPDVVTYN TLIKGFCKYK RVEEGMEVFR
EMSQRGLVGN TVTYNILIQG LFQAGDCDMA QEIFKEMVSD GVPPNIMTYN TLLDGLCKNG
KLEKAMVVFE YLQRSKMEPT IYTYNIMIEG MCKAGKVEDG WDLFCNLSLK GVKPDVVAYN
TMISGFCRKG SKEEADALFK EMKEDGTLPN SGCYNTLIRA RLRDGDREAS AELIKEMRSC
GFAGDASTIG LVTNMLHDGR LDKSFLDMLS
