PPR92_ARATH
ID PPR92_ARATH Reviewed; 548 AA.
AC Q3ECK2; Q0WVV4; Q9SI82;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 15-JAN-2008, sequence version 2.
DT 25-MAY-2022, entry version 102.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g62680, mitochondrial;
DE Flags: Precursor;
GN OrderedLocusNames=At1g62680; ORFNames=F23N19.22;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAF19552.1; Type=Erroneous gene model prediction; Note=The predicted gene has been split into 2 genes: At1g62670 and At1g62680.; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC007190; AAF19552.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE33993.1; -; Genomic_DNA.
DR EMBL; CP002684; ANM60189.1; -; Genomic_DNA.
DR EMBL; AK226633; BAE98744.1; -; mRNA.
DR RefSeq; NP_001322491.1; NM_001334048.1.
DR RefSeq; NP_176455.2; NM_104945.3.
DR AlphaFoldDB; Q3ECK2; -.
DR SMR; Q3ECK2; -.
DR PaxDb; Q3ECK2; -.
DR PRIDE; Q3ECK2; -.
DR ProteomicsDB; 234800; -.
DR EnsemblPlants; AT1G62680.1; AT1G62680.1; AT1G62680.
DR EnsemblPlants; AT1G62680.2; AT1G62680.2; AT1G62680.
DR GeneID; 842565; -.
DR Gramene; AT1G62680.1; AT1G62680.1; AT1G62680.
DR Gramene; AT1G62680.2; AT1G62680.2; AT1G62680.
DR KEGG; ath:AT1G62680; -.
DR Araport; AT1G62680; -.
DR TAIR; locus:2026207; AT1G62680.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_0_1; -.
DR InParanoid; Q3ECK2; -.
DR OMA; MTHASPK; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q3ECK2; -.
DR PRO; PR:Q3ECK2; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q3ECK2; baseline and differential.
DR Genevisible; Q3ECK2; AT.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR Gene3D; 1.25.40.10; -; 4.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF12854; PPR_1; 2.
DR Pfam; PF13041; PPR_2; 4.
DR Pfam; PF13812; PPR_3; 1.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 11.
DR PROSITE; PS51375; PPR; 12.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..43
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 44..548
FT /note="Pentatricopeptide repeat-containing protein
FT At1g62680, mitochondrial"
FT /id="PRO_0000342833"
FT REPEAT 84..118
FT /note="PPR 1"
FT REPEAT 119..153
FT /note="PPR 2"
FT REPEAT 154..188
FT /note="PPR 3"
FT REPEAT 189..223
FT /note="PPR 4"
FT REPEAT 224..258
FT /note="PPR 5"
FT REPEAT 259..293
FT /note="PPR 6"
FT REPEAT 294..328
FT /note="PPR 7"
FT REPEAT 329..363
FT /note="PPR 8"
FT REPEAT 364..398
FT /note="PPR 9"
FT REPEAT 399..433
FT /note="PPR 10"
FT REPEAT 434..468
FT /note="PPR 11"
FT REPEAT 469..503
FT /note="PPR 12"
FT CONFLICT 302
FT /note="I -> V (in Ref. 3; BAE98744)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 548 AA; 61449 MW; 9A38488C8134EEF9 CRC64;
MQRSIAMTAK RFLHRNLLEN GKPRTASSPS FSHCSSCRCW VRASSSVSGG DLRERLSKTR
LRDIKLNDAI DLFSDMVKSR PFPSIVDFNR LLSAIVKLKK YDVVISLGKK MEVLGIRNDL
YTFNIVINCF CCCFQVSLAL SILGKMLKLG YEPDRVTIGS LVNGFCRRNR VSDAVSLVDK
MVEIGYKPDI VAYNAIIDSL CKTKRVNDAF DFFKEIERKG IRPNVVTYTA LVNGLCNSSR
WSDAARLLSD MIKKKITPNV ITYSALLDAF VKNGKVLEAK ELFEEMVRMS IDPDIVTYSS
LINGLCLHDR IDEANQMFDL MVSKGCLADV VSYNTLINGF CKAKRVEDGM KLFREMSQRG
LVSNTVTYNT LIQGFFQAGD VDKAQEFFSQ MDFFGISPDI WTYNILLGGL CDNGELEKAL
VIFEDMQKRE MDLDIVTYTT VIRGMCKTGK VEEAWSLFCS LSLKGLKPDI VTYTTMMSGL
CTKGLLHEVE ALYTKMKQEG LMKNDCTLSD GDITLSAELI KKMLSCGYAP SLLKDIKSGV
CKKALSLL
