PPR93_ARATH
ID PPR93_ARATH Reviewed; 485 AA.
AC Q9SI78; Q6NKY2;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 03-AUG-2022, entry version 106.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g62720;
GN OrderedLocusNames=At1g62720; ORFNames=F23N19.8;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 60-485.
RC STRAIN=cv. Columbia;
RA Kim C.J., Chen H., Cheuk R.F., Shinn P., Carninci P., Hayashizaki Y.,
RA Ishida J., Kamiya A., Kawai J., Narusaka M., Sakurai T., Satou M., Seki M.,
RA Shinozaki K., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (APR-2004) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC007190; AAF19537.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE33997.1; -; Genomic_DNA.
DR EMBL; AK221583; BAD95075.1; -; mRNA.
DR EMBL; BT012561; AAS99705.1; -; mRNA.
DR RefSeq; NP_176459.2; NM_104949.2.
DR AlphaFoldDB; Q9SI78; -.
DR SMR; Q9SI78; -.
DR STRING; 3702.AT1G62720.1; -.
DR PaxDb; Q9SI78; -.
DR PRIDE; Q9SI78; -.
DR EnsemblPlants; AT1G62720.1; AT1G62720.1; AT1G62720.
DR GeneID; 842570; -.
DR Gramene; AT1G62720.1; AT1G62720.1; AT1G62720.
DR KEGG; ath:AT1G62720; -.
DR Araport; AT1G62720; -.
DR TAIR; locus:2026172; AT1G62720.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_0_1; -.
DR InParanoid; Q9SI78; -.
DR OMA; CKIRNAN; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9SI78; -.
DR PRO; PR:Q9SI78; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9SI78; baseline and differential.
DR Genevisible; Q9SI78; AT.
DR GO; GO:0005739; C:mitochondrion; IDA:TAIR.
DR GO; GO:0009845; P:seed germination; IMP:TAIR.
DR Gene3D; 1.25.40.10; -; 6.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 5.
DR TIGRFAMs; TIGR00756; PPR; 11.
DR PROSITE; PS51375; PPR; 12.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..485
FT /note="Pentatricopeptide repeat-containing protein
FT At1g62720"
FT /id="PRO_0000342834"
FT REPEAT 68..102
FT /note="PPR 1"
FT REPEAT 103..137
FT /note="PPR 2"
FT REPEAT 138..172
FT /note="PPR 3"
FT REPEAT 173..207
FT /note="PPR 4"
FT REPEAT 208..242
FT /note="PPR 5"
FT REPEAT 243..277
FT /note="PPR 6"
FT REPEAT 278..312
FT /note="PPR 7"
FT REPEAT 313..347
FT /note="PPR 8"
FT REPEAT 348..378
FT /note="PPR 9"
FT REPEAT 380..414
FT /note="PPR 10"
FT REPEAT 415..449
FT /note="PPR 11"
FT REPEAT 450..484
FT /note="PPR 12"
SQ SEQUENCE 485 AA; 55171 MW; 9B4AF6F093E76004 CRC64;
MRRSTTISIA SKANKFLNLC LLQKGNPVIV PFISRFWGRT FSTKRSSMNL EEEIDLFCKM
IQSRPLPSIV DFSKVLSKIA KSKNYDLVIS LFHHMEVCGI GHDLYSYNIV INCLCRCSRF
VIALSVVGKM MKFGYEPDVV TVSSLINGFC QGNRVFDAID LVSKMEEMGF RPDVVIYNTI
IDGSCKIGLV NDAVELFDRM ERDGVRADAV TYNSLVAGLC CSGRWSDAAR LMRDMVMRDI
VPNVITFTAV IDVFVKEGKF SEAMKLYEEM TRRCVDPDVF TYNSLINGLC MHGRVDEAKQ
MLDLMVTKGC LPDVVTYNTL INGFCKSKRV DEGTKLFREM AQRGLVGDTI TYNTIIQGYF
QAGRPDAAQE IFSRMDSRPN IRTYSILLYG LCMNWRVEKA LVLFENMQKS EIELDITTYN
IVIHGMCKIG NVEDAWDLFR SLSCKGLKPD VVSYTTMISG FCRKRQWDKS DLLYRKMQED
GLLPL
