PPR94_ARATH
ID PPR94_ARATH Reviewed; 632 AA.
AC Q9LQ16;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 106.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g62910;
GN OrderedLocusNames=At1g62910; ORFNames=F16P17.5;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AC011000; AAF75801.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE34020.1; -; Genomic_DNA.
DR PIR; F96653; F96653.
DR RefSeq; NP_176479.2; NM_104969.4.
DR AlphaFoldDB; Q9LQ16; -.
DR SMR; Q9LQ16; -.
DR STRING; 3702.AT1G62910.1; -.
DR iPTMnet; Q9LQ16; -.
DR PaxDb; Q9LQ16; -.
DR PRIDE; Q9LQ16; -.
DR ProteomicsDB; 236593; -.
DR EnsemblPlants; AT1G62910.1; AT1G62910.1; AT1G62910.
DR GeneID; 842592; -.
DR Gramene; AT1G62910.1; AT1G62910.1; AT1G62910.
DR KEGG; ath:AT1G62910; -.
DR Araport; AT1G62910; -.
DR TAIR; locus:2015549; AT1G62910.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_0_1; -.
DR InParanoid; Q9LQ16; -.
DR OMA; AMEFFHE; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9LQ16; -.
DR PRO; PR:Q9LQ16; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9LQ16; baseline and differential.
DR GO; GO:0005739; C:mitochondrion; IDA:TAIR.
DR GO; GO:0090617; P:mitochondrial mRNA 5'-end processing; IDA:TAIR.
DR Gene3D; 1.25.40.10; -; 6.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 7.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 14.
DR PROSITE; PS51375; PPR; 15.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..632
FT /note="Pentatricopeptide repeat-containing protein
FT At1g62910"
FT /id="PRO_0000342835"
FT REPEAT 46..81
FT /note="PPR 1"
FT REPEAT 82..116
FT /note="PPR 2"
FT REPEAT 117..151
FT /note="PPR 3"
FT REPEAT 152..186
FT /note="PPR 4"
FT REPEAT 187..221
FT /note="PPR 5"
FT REPEAT 222..256
FT /note="PPR 6"
FT REPEAT 257..291
FT /note="PPR 7"
FT REPEAT 292..326
FT /note="PPR 8"
FT REPEAT 327..361
FT /note="PPR 9"
FT REPEAT 362..396
FT /note="PPR 10"
FT REPEAT 397..431
FT /note="PPR 11"
FT REPEAT 432..466
FT /note="PPR 12"
FT REPEAT 467..501
FT /note="PPR 13"
FT REPEAT 502..536
FT /note="PPR 14"
FT REPEAT 537..571
FT /note="PPR 15"
FT REPEAT 572..606
FT /note="PPR 16"
SQ SEQUENCE 632 AA; 70983 MW; F65E7DF2FD7B1F2D CRC64;
MQRSISLTAK RLFVHWNLQG IGNPPTVPSF FNLCGSGCWE RSFASASGDY REILRNRLSD
IIKVDDAVDL FGDMVKSRPF PSIVEFNKLL SAVAKMNKFE LVISLGEQMQ TLGISHDLYT
YSIFINCFCR RSQLSLALAV LAKMMKLGYE PDIVTLSSLL NGYCHSKRIS DAVALVDQMV
EMGYKPDTFT FTTLIHGLFL HNKASEAVAL VDQMVQRGCQ PDLVTYGTVV NGLCKRGDID
LALSLLKKME KGKIEADVVI YNTIIDGLCK YKHMDDALNL FTEMDNKGIR PDVFTYSSLI
SCLCNYGRWS DASRLLSDMI ERKINPNVVT FSALIDAFVK EGKLVEAEKL YDEMIKRSID
PDIFTYSSLI NGFCMHDRLD EAKHMFELMI SKDCFPNVVT YSTLIKGFCK AKRVEEGMEL
FREMSQRGLV GNTVTYTTLI HGFFQARDCD NAQMVFKQMV SVGVHPNILT YNILLDGLCK
NGKLAKAMVV FEYLQRSTME PDIYTYNIMI EGMCKAGKVE DGWELFCNLS LKGVSPNVIA
YNTMISGFCR KGSKEEADSL LKKMKEDGPL PNSGTYNTLI RARLRDGDRE ASAELIKEMR
SCGFAGDAST IGLVTNMLHD GRLDKSFLDM LS
