PPR96_ARATH
ID PPR96_ARATH Reviewed; 629 AA.
AC Q9LQ14;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-JUL-2008, sequence version 2.
DT 03-AUG-2022, entry version 117.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g62930, chloroplastic;
DE Flags: Precursor;
GN OrderedLocusNames=At1g62930; ORFNames=F16P17.7;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 8-558.
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAF75803.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC011000; AAF75803.1; ALT_INIT; Genomic_DNA.
DR EMBL; CP002684; AEE34023.1; -; Genomic_DNA.
DR EMBL; AY056104; -; NOT_ANNOTATED_CDS; mRNA.
DR PIR; H96653; H96653.
DR RefSeq; NP_176481.2; NM_104971.3.
DR AlphaFoldDB; Q9LQ14; -.
DR SMR; Q9LQ14; -.
DR STRING; 3702.AT1G62930.1; -.
DR iPTMnet; Q9LQ14; -.
DR PaxDb; Q9LQ14; -.
DR PRIDE; Q9LQ14; -.
DR ProteomicsDB; 236594; -.
DR EnsemblPlants; AT1G62930.1; AT1G62930.1; AT1G62930.
DR GeneID; 842594; -.
DR Gramene; AT1G62930.1; AT1G62930.1; AT1G62930.
DR KEGG; ath:AT1G62930; -.
DR Araport; AT1G62930; -.
DR TAIR; locus:2015494; AT1G62930.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_0_1; -.
DR InParanoid; Q9LQ14; -.
DR OMA; RDCENAQ; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9LQ14; -.
DR PRO; PR:Q9LQ14; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9LQ14; baseline and differential.
DR Genevisible; Q9LQ14; AT.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR GO; GO:0005739; C:mitochondrion; IDA:TAIR.
DR GO; GO:0006397; P:mRNA processing; IMP:TAIR.
DR Gene3D; 1.25.40.10; -; 7.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF12854; PPR_1; 2.
DR Pfam; PF13041; PPR_2; 6.
DR SUPFAM; SSF48452; SSF48452; 2.
DR TIGRFAMs; TIGR00756; PPR; 14.
DR PROSITE; PS51375; PPR; 15.
PE 2: Evidence at transcript level;
KW Chloroplast; Plastid; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..41
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 42..629
FT /note="Pentatricopeptide repeat-containing protein
FT At1g62930, chloroplastic"
FT /id="PRO_0000342837"
FT REPEAT 79..113
FT /note="PPR 1"
FT REPEAT 114..148
FT /note="PPR 2"
FT REPEAT 149..183
FT /note="PPR 3"
FT REPEAT 184..218
FT /note="PPR 4"
FT REPEAT 219..253
FT /note="PPR 5"
FT REPEAT 254..288
FT /note="PPR 6"
FT REPEAT 289..323
FT /note="PPR 7"
FT REPEAT 324..358
FT /note="PPR 8"
FT REPEAT 359..393
FT /note="PPR 9"
FT REPEAT 394..428
FT /note="PPR 10"
FT REPEAT 429..463
FT /note="PPR 11"
FT REPEAT 464..498
FT /note="PPR 12"
FT REPEAT 499..533
FT /note="PPR 13"
FT REPEAT 534..568
FT /note="PPR 14"
FT REPEAT 569..603
FT /note="PPR 15"
SQ SEQUENCE 629 AA; 70923 MW; 7A8FDC69A5295416 CRC64;
MTSCVHLGIV ASQSKKMSLA KRFAQLRKAS PLFSLRGVYF SAASYDYREK LSRNVLLDLK
LDDAVDLFGE MVQSRPLPSI VEFNKLLSAI AKMNKFDLVI SLGERMQNLR ISYDLYSYNI
LINCFCRRSQ LPLALAVLGK MMKLGYEPDI VTLSSLLNGY CHGKRISEAV ALVDQMFVME
YQPNTVTFNT LIHGLFLHNK ASEAVALIDR MVARGCQPDL FTYGTVVNGL CKRGDIDLAL
SLLKKMEKGK IEADVVIYTT IIDALCNYKN VNDALNLFTE MDNKGIRPNV VTYNSLIRCL
CNYGRWSDAS RLLSDMIERK INPNVVTFSA LIDAFVKEGK LVEAEKLYDE MIKRSIDPDI
FTYSSLINGF CMHDRLDEAK HMFELMISKD CFPNVVTYNT LIKGFCKAKR VEEGMELFRE
MSQRGLVGNT VTYNTLIQGL FQAGDCDMAQ KIFKKMVSDG VPPDIITYSI LLDGLCKYGK
LEKALVVFEY LQKSKMEPDI YTYNIMIEGM CKAGKVEDGW DLFCSLSLKG VKPNVIIYTT
MISGFCRKGL KEEADALFRE MKEDGTLPNS GTYNTLIRAR LRDGDKAASA ELIKEMRSCG
FVGDASTISM VINMLHDGRL EKSYLEMLS
