PPR97_ARATH
ID PPR97_ARATH Reviewed; 590 AA.
AC Q9CAN6; Q1PFH3;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2001, sequence version 1.
DT 03-AUG-2022, entry version 114.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g63070, mitochondrial;
DE Flags: Precursor;
GN OrderedLocusNames=At1g63070; ORFNames=F16M19.15;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RC STRAIN=cv. Columbia;
RX PubMed=17147637; DOI=10.1111/j.1467-7652.2006.00183.x;
RA Underwood B.A., Vanderhaeghen R., Whitford R., Town C.D., Hilson P.;
RT "Simultaneous high-throughput recombinational cloning of open reading
RT frames in closed and open configurations.";
RL Plant Biotechnol. J. 4:317-324(2006).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q9CAN6-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q9CAN6-2; Sequence=VSP_034547, VSP_034548;
CC -!- MISCELLANEOUS: [Isoform 2]: May be due to intron retention.
CC {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC010795; AAG51617.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE34050.1; -; Genomic_DNA.
DR EMBL; DQ446390; ABE65736.1; -; mRNA.
DR PIR; A96656; A96656.
DR RefSeq; NP_176495.1; NM_104985.1. [Q9CAN6-1]
DR AlphaFoldDB; Q9CAN6; -.
DR SMR; Q9CAN6; -.
DR STRING; 3702.AT1G63070.1; -.
DR iPTMnet; Q9CAN6; -.
DR PaxDb; Q9CAN6; -.
DR PRIDE; Q9CAN6; -.
DR EnsemblPlants; AT1G63070.1; AT1G63070.1; AT1G63070. [Q9CAN6-1]
DR GeneID; 842610; -.
DR Gramene; AT1G63070.1; AT1G63070.1; AT1G63070. [Q9CAN6-1]
DR KEGG; ath:AT1G63070; -.
DR Araport; AT1G63070; -.
DR TAIR; locus:2015218; AT1G63070.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_0_1; -.
DR InParanoid; Q9CAN6; -.
DR OMA; MIQRSIA; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9CAN6; -.
DR PRO; PR:Q9CAN6; -.
DR Proteomes; UP000006548; Chromosome 1.
DR Genevisible; Q9CAN6; AT.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF12854; PPR_1; 2.
DR Pfam; PF13041; PPR_2; 5.
DR TIGRFAMs; TIGR00756; PPR; 13.
DR PROSITE; PS51375; PPR; 14.
PE 2: Evidence at transcript level;
KW Alternative splicing; Mitochondrion; Reference proteome; Repeat;
KW Transit peptide.
FT TRANSIT 1..34
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 35..590
FT /note="Pentatricopeptide repeat-containing protein
FT At1g63070, mitochondrial"
FT /id="PRO_0000342838"
FT REPEAT 74..108
FT /note="PPR 1"
FT REPEAT 109..143
FT /note="PPR 2"
FT REPEAT 144..178
FT /note="PPR 3"
FT REPEAT 179..213
FT /note="PPR 4"
FT REPEAT 214..248
FT /note="PPR 5"
FT REPEAT 249..283
FT /note="PPR 6"
FT REPEAT 284..318
FT /note="PPR 7"
FT REPEAT 319..353
FT /note="PPR 8"
FT REPEAT 355..389
FT /note="PPR 9"
FT REPEAT 390..424
FT /note="PPR 10"
FT REPEAT 425..459
FT /note="PPR 11"
FT REPEAT 460..494
FT /note="PPR 12"
FT REPEAT 495..529
FT /note="PPR 13"
FT REPEAT 530..564
FT /note="PPR 14"
FT VAR_SEQ 349..360
FT /note="SKHCFPDVVAYN -> RSIDPSFVCTIV (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:17147637"
FT /id="VSP_034547"
FT VAR_SEQ 361..590
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:17147637"
FT /id="VSP_034548"
SQ SEQUENCE 590 AA; 66072 MW; 596067345518244F CRC64;
MMRSVAVIGK KCLHRHTVLL KGNPRTTLCW ERSFAGASSD DCRENLSRKV LQDLKLDDAI
GLFGDMVKSR PFPSIVEFSK LLSAIAKMNK FDLVISLGEQ MQNLGISHNL YTYSIFINYF
CRRSQLSLAL AILGKMMKLG YGPSIVTLNS LLNGFCHGNR ISEAVALVDQ MVEMGYQPDT
VTFTTLVHGL FQHNKASEAV ALVERMVVKG CQPDLVTYGA VINGLCKRGE PDLALNLLNK
MEKGKIEADV VIYNTIIDGL CKYKHMDDAF DLFNKMETKG IKPDVFTYNP LISCLCNYGR
WSDASRLLSD MLEKNINPDL VFFNALIDAF VKEGKLVEAE KLYDEMVKSK HCFPDVVAYN
TLIKGFCKYK RVEEGMEVFR EMSQRGLVGN TVTYTTLIHG FFQARDCDNA QMVFKQMVSD
GVHPDIMTYN ILLDGLCNNG NVETALVVFE YMQKRDMKLD IVTYTTMIEA LCKAGKVEDG
WDLFCSLSLK GVKPNVVTYT TMMSGFCRKG LKEEADALFV EMKEDGPLPN SGTYNTLIRA
RLRDGDEAAS AELIKEMRSC GFAGDASTFG LVTNMLHDGR LDKSFLDMLS
