PPR98_ARATH
ID PPR98_ARATH Reviewed; 614 AA.
AC Q9CAN5;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2001, sequence version 1.
DT 25-MAY-2022, entry version 109.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g63080, mitochondrial;
DE Flags: Precursor;
GN OrderedLocusNames=At1g63080; ORFNames=F16M19.17;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AK226724; Type=Frameshift; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC010795; AAG51614.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE34051.1; -; Genomic_DNA.
DR EMBL; CP002684; ANM58874.1; -; Genomic_DNA.
DR EMBL; CP002684; ANM58875.1; -; Genomic_DNA.
DR EMBL; AK226724; -; NOT_ANNOTATED_CDS; mRNA.
DR PIR; B96656; B96656.
DR RefSeq; NP_001319297.1; NM_001334064.1.
DR RefSeq; NP_001321279.1; NM_001334065.1.
DR RefSeq; NP_176496.1; NM_104986.3.
DR AlphaFoldDB; Q9CAN5; -.
DR SMR; Q9CAN5; -.
DR STRING; 3702.AT1G63080.1; -.
DR PaxDb; Q9CAN5; -.
DR PRIDE; Q9CAN5; -.
DR ProteomicsDB; 236595; -.
DR EnsemblPlants; AT1G63080.1; AT1G63080.1; AT1G63080.
DR EnsemblPlants; AT1G63080.2; AT1G63080.2; AT1G63080.
DR EnsemblPlants; AT1G63080.3; AT1G63080.3; AT1G63080.
DR GeneID; 842611; -.
DR Gramene; AT1G63080.1; AT1G63080.1; AT1G63080.
DR Gramene; AT1G63080.2; AT1G63080.2; AT1G63080.
DR Gramene; AT1G63080.3; AT1G63080.3; AT1G63080.
DR KEGG; ath:AT1G63080; -.
DR Araport; AT1G63080; -.
DR TAIR; locus:2015228; AT1G63080.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_0_1; -.
DR InParanoid; Q9CAN5; -.
DR OMA; HMFEVMK; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9CAN5; -.
DR PRO; PR:Q9CAN5; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9CAN5; baseline and differential.
DR Genevisible; Q9CAN5; AT.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR Gene3D; 1.25.40.10; -; 6.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 1.
DR Pfam; PF12854; PPR_1; 2.
DR Pfam; PF13041; PPR_2; 6.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 14.
DR PROSITE; PS51375; PPR; 15.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..7
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 8..614
FT /note="Pentatricopeptide repeat-containing protein
FT At1g63080, mitochondrial"
FT /id="PRO_0000342839"
FT REPEAT 64..98
FT /note="PPR 1"
FT REPEAT 99..133
FT /note="PPR 2"
FT REPEAT 134..168
FT /note="PPR 3"
FT REPEAT 169..203
FT /note="PPR 4"
FT REPEAT 204..238
FT /note="PPR 5"
FT REPEAT 239..273
FT /note="PPR 6"
FT REPEAT 274..308
FT /note="PPR 7"
FT REPEAT 309..343
FT /note="PPR 8"
FT REPEAT 344..378
FT /note="PPR 9"
FT REPEAT 379..413
FT /note="PPR 10"
FT REPEAT 414..448
FT /note="PPR 11"
FT REPEAT 449..483
FT /note="PPR 12"
FT REPEAT 484..518
FT /note="PPR 13"
FT REPEAT 519..553
FT /note="PPR 14"
FT REPEAT 554..588
FT /note="PPR 15"
SQ SEQUENCE 614 AA; 68848 MW; 794359B044263752 CRC64;
MSLAKRFVHL RKASPSFCLR GIYFSGLSYD GYREKLSRNA LLHLKLDEAV DLFGEMVKSR
PFPSIVEFSK LLSAIAKMKK FDLVISFGEK MEILGVSHNL YTYNIMINCL CRRSQLSFAL
AILGKMMKLG YGPSIVTLNS LLNGFCHGNR ISEAVALVDQ MVEMGYQPDT VTFTTLVHGL
FQHNKASEAV ALVERMVVKG CQPDLVTYGA VINGLCKRGE PDLALNLLNK MEKGKIEADV
VIYSTVIDSL CKYRHVDDAL NLFTEMDNKG IRPDVFTYSS LISCLCNYGR WSDASRLLSD
MLERKINPNV VTFNSLIDAF AKEGKLIEAE KLFDEMIQRS IDPNIVTYNS LINGFCMHDR
LDEAQQIFTL MVSKDCLPDV VTYNTLINGF CKAKKVVDGM ELFRDMSRRG LVGNTVTYTT
LIHGFFQASD CDNAQMVFKQ MVSDGVHPNI MTYNTLLDGL CKNGKLEKAM VVFEYLQKSK
MEPDIYTYNI MSEGMCKAGK VEDGWDLFCS LSLKGVKPDV IAYNTMISGF CKKGLKEEAY
TLFIKMKEDG PLPDSGTYNT LIRAHLRDGD KAASAELIKE MRSCRFAGDA STYGLVTDML
HDGRLDKGFL EVLS
