PPR9_ARATH
ID PPR9_ARATH Reviewed; 660 AA.
AC Q9LR67; Q0WPE3;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 25-MAY-2022, entry version 117.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g03560, mitochondrial;
DE Flags: Precursor;
GN OrderedLocusNames=At1g03560; ORFNames=F21B7.18;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 19-660.
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC002560; AAF86531.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE27586.1; -; Genomic_DNA.
DR EMBL; AK229132; BAF01006.1; -; mRNA.
DR PIR; T00902; T00902.
DR RefSeq; NP_171855.1; NM_100238.4.
DR AlphaFoldDB; Q9LR67; -.
DR SMR; Q9LR67; -.
DR PaxDb; Q9LR67; -.
DR PRIDE; Q9LR67; -.
DR EnsemblPlants; AT1G03560.1; AT1G03560.1; AT1G03560.
DR GeneID; 839458; -.
DR Gramene; AT1G03560.1; AT1G03560.1; AT1G03560.
DR KEGG; ath:AT1G03560; -.
DR Araport; AT1G03560; -.
DR TAIR; locus:2020808; AT1G03560.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_0_1; -.
DR InParanoid; Q9LR67; -.
DR OMA; CLSLYHE; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9LR67; -.
DR PRO; PR:Q9LR67; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9LR67; baseline and differential.
DR Genevisible; Q9LR67; AT.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR Gene3D; 1.25.40.10; -; 6.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 4.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 10.
DR PROSITE; PS51375; PPR; 14.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..12
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 13..660
FT /note="Pentatricopeptide repeat-containing protein
FT At1g03560, mitochondrial"
FT /id="PRO_0000342750"
FT REPEAT 151..185
FT /note="PPR 1"
FT REPEAT 186..220
FT /note="PPR 2"
FT REPEAT 221..255
FT /note="PPR 3"
FT REPEAT 256..290
FT /note="PPR 4"
FT REPEAT 291..325
FT /note="PPR 5"
FT REPEAT 326..360
FT /note="PPR 6"
FT REPEAT 361..395
FT /note="PPR 7"
FT REPEAT 396..430
FT /note="PPR 8"
FT REPEAT 431..465
FT /note="PPR 9"
FT REPEAT 466..496
FT /note="PPR 10"
FT REPEAT 502..536
FT /note="PPR 11"
FT REPEAT 537..571
FT /note="PPR 12"
FT REPEAT 574..605
FT /note="PPR 13"
FT REPEAT 606..640
FT /note="PPR 14"
FT CONFLICT 19
FT /note="C -> G (in Ref. 3; BAF01006)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 660 AA; 74628 MW; 5823AD8D3BB9A3F8 CRC64;
MRRFYRKPFS VPLLNRPHCS SQSHCLYKNG DFLSDDSKCS PLSSSRTSVR WVFNSSSLPP
PEWIEPFNDV SDLVKSNRNL LPSPWVSQIL NLLDGSASME SNLDGFCRKF LIKLSPNFVS
FVLKSDEIRE KPDIAWSFFC WSRKQKKYTH NLECYVSLVD VLALAKDVDR IRFVSSEIKK
FEFPMTVSAA NALIKSFGKL GMVEELLWVW RKMKENGIEP TLYTYNFLMN GLVSAMFVDS
AERVFEVMES GRIKPDIVTY NTMIKGYCKA GQTQKAMEKL RDMETRGHEA DKITYMTMIQ
ACYADSDFGS CVALYQEMDE KGIQVPPHAF SLVIGGLCKE GKLNEGYTVF ENMIRKGSKP
NVAIYTVLID GYAKSGSVED AIRLLHRMID EGFKPDVVTY SVVVNGLCKN GRVEEALDYF
HTCRFDGLAI NSMFYSSLID GLGKAGRVDE AERLFEEMSE KGCTRDSYCY NALIDAFTKH
RKVDEAIALF KRMEEEEGCD QTVYTYTILL SGMFKEHRNE EALKLWDMMI DKGITPTAAC
FRALSTGLCL SGKVARACKI LDELAPMGVI LDAACEDMIN TLCKAGRIKE ACKLADGITE
RGREVPGRIR TVMINALRKV GKADLAMKLM HSKIGIGYER MGSVKRRVKF TTLLETCFDS
