PR1F4_ARATH
ID PR1F4_ARATH Reviewed; 188 AA.
AC Q9LIC7;
DT 14-OCT-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 92.
DE RecName: Full=PRA1 family protein F4;
DE Short=AtPRA1.F4;
GN Name=PRA1F4; OrderedLocusNames=At3g13710; ORFNames=MMM17.13;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10907853; DOI=10.1093/dnares/7.3.217;
RA Kaneko T., Katoh T., Sato S., Nakamura Y., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. II. Sequence
RT features of the 4,251,695 bp regions covered by 90 P1, TAC and BAC
RT clones.";
RL DNA Res. 7:217-221(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Bautista V.R., Kim C.J., Chen H., Quinitio C., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (NOV-2006) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP SUBCELLULAR LOCATION, GENE FAMILY, AND NOMENCLATURE.
RX PubMed=18583532; DOI=10.1104/pp.108.122226;
RA Alvim Kamei C.L., Boruc J., Vandepoele K., Van den Daele H., Maes S.,
RA Russinova E., Inze D., de Veylder L.;
RT "The PRA1 gene family in Arabidopsis.";
RL Plant Physiol. 147:1735-1749(2008).
CC -!- FUNCTION: May be involved in both secretory and endocytic intracellular
CC trafficking in the endosomal/prevacuolar compartments. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Endosome membrane {ECO:0000269|PubMed:18583532};
CC Multi-pass membrane protein {ECO:0000269|PubMed:18583532}.
CC -!- SIMILARITY: Belongs to the PRA1 family. {ECO:0000305}.
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DR EMBL; AP001307; BAB01920.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE75402.1; -; Genomic_DNA.
DR EMBL; AK229270; BAF01134.1; -; mRNA.
DR EMBL; BT029440; ABK59669.1; -; mRNA.
DR RefSeq; NP_187984.1; NM_112221.2.
DR AlphaFoldDB; Q9LIC7; -.
DR BioGRID; 5914; 29.
DR IntAct; Q9LIC7; 29.
DR STRING; 3702.AT3G13710.1; -.
DR PaxDb; Q9LIC7; -.
DR PRIDE; Q9LIC7; -.
DR ProteomicsDB; 234865; -.
DR EnsemblPlants; AT3G13710.1; AT3G13710.1; AT3G13710.
DR GeneID; 820580; -.
DR Gramene; AT3G13710.1; AT3G13710.1; AT3G13710.
DR KEGG; ath:AT3G13710; -.
DR Araport; AT3G13710; -.
DR TAIR; locus:2091541; AT3G13710.
DR eggNOG; KOG3142; Eukaryota.
DR HOGENOM; CLU_060198_2_1_1; -.
DR InParanoid; Q9LIC7; -.
DR OMA; NHESISR; -.
DR PhylomeDB; Q9LIC7; -.
DR PRO; PR:Q9LIC7; -.
DR Proteomes; UP000006548; Chromosome 3.
DR Genevisible; Q9LIC7; AT.
DR GO; GO:0005783; C:endoplasmic reticulum; IDA:TAIR.
DR GO; GO:0010008; C:endosome membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0005794; C:Golgi apparatus; IBA:GO_Central.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0016192; P:vesicle-mediated transport; IDA:TAIR.
DR InterPro; IPR004895; Prenylated_rab_accept_PRA1.
DR PANTHER; PTHR19317; PTHR19317; 1.
DR Pfam; PF03208; PRA1; 1.
PE 2: Evidence at transcript level;
KW Endosome; Membrane; Reference proteome; Transmembrane; Transmembrane helix;
KW Transport.
FT CHAIN 1..188
FT /note="PRA1 family protein F4"
FT /id="PRO_0000352262"
FT TRANSMEM 67..86
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 90..107
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 119..139
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 142..162
FT /note="Helical"
FT /evidence="ECO:0000255"
FT REGION 1..25
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..21
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 188 AA; 21001 MW; 13374022488A28A6 CRC64;
MANNDEITTS SHASPAVNHE SISRAKQRIK DGLATRRSWR VMFDLHSTGL PHGVSDVFSR
IKTNLAYFRS NYAIVILNVI FFSLIWHPTS LIVFTGLVFL WIFLYFLRDV PLKVFRFQID
DRAVLIGLSV ITIVLLLLTN ATFNIVAALM AGAVLVLIHA VIRKTDDLFL DEEAATTETS
GLTSHPSS
