ID   PRDA1_ORYSJ             Reviewed;         382 AA.
AC   Q53K52; Q53K50; Q53K51;
DT   12-APR-2017, integrated into UniProtKB/Swiss-Prot.
DT   24-MAY-2005, sequence version 1.
DT   03-AUG-2022, entry version 88.
DE   RecName: Full=Protein PEP-RELATED DEVELOPMENT ARRESTED 1 homolog, chloroplastic {ECO:0000305};
DE            Short=OsPRDA1 {ECO:0000305};
DE   Flags: Precursor;
GN   OrderedLocusNames=Os11g0425300 {ECO:0000312|EMBL:BAT13785.1},
GN   LOC_Os11g23790 {ECO:0000312|EMBL:AAX94817.1};
GN   ORFNames=OsJ_12008 {ECO:0000312|EMBL:EEE59640.1};
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG   The rice chromosomes 11 and 12 sequencing consortia;
RT   "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT   genes and recent gene duplications.";
RL   BMC Biol. 3:20-20(2005).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [4]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA   Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA   Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA   Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using next
RT   generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA   Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA   Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA   Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA   Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA   Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA   Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA   Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA   Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA   Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA   Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA   Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA   Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA   Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA   McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT   "The genomes of Oryza sativa: a history of duplications.";
RL   PLoS Biol. 3:266-281(2005).
RN   [6]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
RC   STRAIN=cv. Nipponbare;
RX   PubMed=12869764; DOI=10.1126/science.1081288;
RG   The rice full-length cDNA consortium;
RT   "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT   japonica rice.";
RL   Science 301:376-379(2003).
CC   -!- FUNCTION: Plays an essential role in early steps of chloroplast
CC       development. May be involved in the redox control of plastid gene
CC       expression by maintening the redox state around chloroplast nucleoids.
CC       May positively regulate plastid-encoded RNA polymerase (PEP) activity.
CC       {ECO:0000250|UniProtKB:Q1H5E9}.
CC   -!- SUBCELLULAR LOCATION: Plastid, chloroplast stroma, chloroplast nucleoid
CC       {ECO:0000250|UniProtKB:Q1H5E9}.
CC   -!- ALTERNATIVE PRODUCTS:
CC       Event=Alternative splicing; Named isoforms=2;
CC       Name=1;
CC         IsoId=Q53K52-1; Sequence=Displayed;
CC       Name=2;
CC         IsoId=Q53K52-2; Sequence=VSP_058841, VSP_058842;
CC   -!- SEQUENCE CAUTION:
CC       Sequence=AAX94819.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR   EMBL; AC146913; AAX94817.1; -; Genomic_DNA.
DR   EMBL; AC146913; AAX94819.1; ALT_SEQ; Genomic_DNA.
DR   EMBL; AC146913; AAX94820.1; -; Genomic_DNA.
DR   EMBL; DP000010; ABA93180.1; -; Genomic_DNA.
DR   EMBL; DP000010; ABA93181.1; -; Genomic_DNA.
DR   EMBL; DP000010; ABA93182.1; -; Genomic_DNA.
DR   EMBL; AP008217; BAF28138.1; -; Genomic_DNA.
DR   EMBL; AP014967; BAT13785.1; -; Genomic_DNA.
DR   EMBL; AP014967; BAT13786.1; -; Genomic_DNA.
DR   EMBL; CM000140; EEE59640.1; -; Genomic_DNA.
DR   EMBL; AK065810; BAG89688.1; -; mRNA.
DR   EMBL; AK067248; BAG90331.1; -; mRNA.
DR   RefSeq; XP_015615211.1; XM_015759725.1. [Q53K52-1]
DR   RefSeq; XP_015615212.1; XM_015759726.1. [Q53K52-2]
DR   AlphaFoldDB; Q53K52; -.
DR   SMR; Q53K52; -.
DR   STRING; 4530.OS11T0425300-01; -.
DR   PaxDb; Q53K52; -.
DR   PRIDE; Q53K52; -.
DR   EnsemblPlants; Os11t0425300-01; Os11t0425300-01; Os11g0425300. [Q53K52-1]
DR   EnsemblPlants; Os11t0425300-02; Os11t0425300-02; Os11g0425300. [Q53K52-2]
DR   GeneID; 4350378; -.
DR   Gramene; Os11t0425300-01; Os11t0425300-01; Os11g0425300. [Q53K52-1]
DR   Gramene; Os11t0425300-02; Os11t0425300-02; Os11g0425300. [Q53K52-2]
DR   KEGG; osa:4350378; -.
DR   eggNOG; ENOG502QRV4; Eukaryota.
DR   HOGENOM; CLU_046485_1_0_1; -.
DR   InParanoid; Q53K52; -.
DR   OMA; LEWVHQN; -.
DR   OrthoDB; 809451at2759; -.
DR   Proteomes; UP000000763; Chromosome 11.
DR   Proteomes; UP000007752; Chromosome 3.
DR   Proteomes; UP000059680; Chromosome 11.
DR   GO; GO:0042644; C:chloroplast nucleoid; IEA:UniProtKB-SubCell.
DR   GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro.
DR   InterPro; IPR038961; PRDA1.
DR   PANTHER; PTHR37262; PTHR37262; 1.
PE   2: Evidence at transcript level;
KW   Alternative splicing; Chloroplast; Plastid; Reference proteome;
KW   Transit peptide.
FT   TRANSIT         1..44
FT                   /note="Chloroplast"
FT                   /evidence="ECO:0000255"
FT   CHAIN           45..382
FT                   /note="Protein PEP-RELATED DEVELOPMENT ARRESTED 1 homolog,
FT                   chloroplastic"
FT                   /id="PRO_0000439385"
FT   VAR_SEQ         350..363
FT                   /note="LGGIYANNTSGITA -> VYMQTTHLALQHNI (in isoform 2)"
FT                   /id="VSP_058841"
FT   VAR_SEQ         364..382
FT                   /note="Missing (in isoform 2)"
FT                   /id="VSP_058842"
SQ   SEQUENCE   382 AA;  41368 MW;  F56CF0E528E0E058 CRC64;
     MAILPLSISH SLTSALSATS SGIGRPVARL LHPRVPSRPT VICLAAPPKV PVPIASPASL
     GDDPSKWDPA ECDALLRGGE QVASVLQEML KLMEDMEMDG SFESLAVELI AQGVIGKRVD
     EMESGFLMAL DYMIQLAEKD SDNERKSLLE VVKQTVLDHL TKKCPPHVQV VGLLCQTEKK
     DSRHELLRRV AAGGGVFKND KGLKCQIPGA NLNDIANQAD DLLESMESRP TIPDRKLLAR
     LVIVREEARN MMGGGLLDER NDRGFTTLPE AEVNFLSKLV ALKPGKALER MIKDVMQGKA
     EGADNIENAN AGPDSKLNHL TGISGRGSVT GLKPRPVRPG MFLETVSKVL GGIYANNTSG
     ITAQHLEWVH QTTLKILQEM AF