PRPC_SHEON
ID PRPC_SHEON Reviewed; 375 AA.
AC Q8EJW2;
DT 29-APR-2015, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2003, sequence version 1.
DT 03-AUG-2022, entry version 112.
DE RecName: Full=2-methylcitrate synthase {ECO:0000303|PubMed:14702315};
DE Short=2-MCS {ECO:0000303|PubMed:14702315};
DE Short=MCS {ECO:0000303|PubMed:14702315};
DE EC=2.3.3.5 {ECO:0000250|UniProtKB:P31660};
DE AltName: Full=Citrate synthase {ECO:0000250|UniProtKB:P31660};
DE EC=2.3.3.16 {ECO:0000250|UniProtKB:P31660};
GN Name=prpC; OrderedLocusNames=SO_0344;
OS Shewanella oneidensis (strain MR-1).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
OC Shewanellaceae; Shewanella.
OX NCBI_TaxID=211586;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=MR-1;
RX PubMed=12368813; DOI=10.1038/nbt749;
RA Heidelberg J.F., Paulsen I.T., Nelson K.E., Gaidos E.J., Nelson W.C.,
RA Read T.D., Eisen J.A., Seshadri R., Ward N.L., Methe B.A., Clayton R.A.,
RA Meyer T., Tsapin A., Scott J., Beanan M.J., Brinkac L.M., Daugherty S.C.,
RA DeBoy R.T., Dodson R.J., Durkin A.S., Haft D.H., Kolonay J.F., Madupu R.,
RA Peterson J.D., Umayam L.A., White O., Wolf A.M., Vamathevan J.J.,
RA Weidman J.F., Impraim M., Lee K., Berry K.J., Lee C., Mueller J.,
RA Khouri H.M., Gill J., Utterback T.R., McDonald L.A., Feldblyum T.V.,
RA Smith H.O., Venter J.C., Nealson K.H., Fraser C.M.;
RT "Genome sequence of the dissimilatory metal ion-reducing bacterium
RT Shewanella oneidensis.";
RL Nat. Biotechnol. 20:1118-1123(2002).
RN [2]
RP FUNCTION.
RC STRAIN=MR-1;
RX PubMed=14702315; DOI=10.1128/jb.186.2.454-462.2004;
RA Grimek T.L., Escalante-Semerena J.C.;
RT "The acnD genes of Shewenella oneidensis and Vibrio cholerae encode a new
RT Fe/S-dependent 2-methylcitrate dehydratase enzyme that requires prpF
RT function in vivo.";
RL J. Bacteriol. 186:454-462(2004).
CC -!- FUNCTION: Involved in the catabolism of short chain fatty acids (SCFA)
CC via the tricarboxylic acid (TCA)(acetyl degradation route) and via the
CC 2-methylcitrate cycle II (propionate degradation route). Catalyzes the
CC Claisen condensation of propionyl-CoA and oxaloacetate (OAA) to yield
CC 2-methylcitrate (2-MC) and CoA (PubMed:14702315). Catalyzes the
CC condensation of oxaloacetate with acetyl-CoA (By similarity).
CC {ECO:0000250|UniProtKB:P31660, ECO:0000269|PubMed:14702315}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=H2O + oxaloacetate + propanoyl-CoA = (2S,3S)-2-methylcitrate +
CC CoA + H(+); Xref=Rhea:RHEA:23780, ChEBI:CHEBI:15377,
CC ChEBI:CHEBI:15378, ChEBI:CHEBI:16452, ChEBI:CHEBI:57287,
CC ChEBI:CHEBI:57392, ChEBI:CHEBI:58853; EC=2.3.3.5;
CC Evidence={ECO:0000250|UniProtKB:P31660};
CC -!- CATALYTIC ACTIVITY:
CC Reaction=acetyl-CoA + H2O + oxaloacetate = citrate + CoA + H(+);
CC Xref=Rhea:RHEA:16845, ChEBI:CHEBI:15377, ChEBI:CHEBI:15378,
CC ChEBI:CHEBI:16452, ChEBI:CHEBI:16947, ChEBI:CHEBI:57287,
CC ChEBI:CHEBI:57288; EC=2.3.3.16;
CC Evidence={ECO:0000250|UniProtKB:P31660};
CC -!- PATHWAY: Organic acid metabolism; propanoate degradation.
CC {ECO:0000305}.
CC -!- PATHWAY: Carbohydrate metabolism; tricarboxylic acid cycle; isocitrate
CC from oxaloacetate: step 1/2. {ECO:0000305}.
CC -!- SUBUNIT: Homodimer. {ECO:0000250|UniProtKB:P31660}.
CC -!- SIMILARITY: Belongs to the citrate synthase family. {ECO:0000305}.
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DR EMBL; AE014299; AAN53429.1; -; Genomic_DNA.
DR RefSeq; NP_715984.1; NC_004347.2.
DR RefSeq; WP_011070709.1; NZ_CP053946.1.
DR AlphaFoldDB; Q8EJW2; -.
DR SMR; Q8EJW2; -.
DR STRING; 211586.SO_0344; -.
DR PaxDb; Q8EJW2; -.
DR KEGG; son:SO_0344; -.
DR PATRIC; fig|211586.12.peg.334; -.
DR eggNOG; COG0372; Bacteria.
DR HOGENOM; CLU_025068_2_1_6; -.
DR OMA; LTYCGYD; -.
DR OrthoDB; 1412360at2; -.
DR PhylomeDB; Q8EJW2; -.
DR BioCyc; SONE211586:G1GMP-329-MON; -.
DR UniPathway; UPA00223; UER00717.
DR UniPathway; UPA00946; -.
DR Proteomes; UP000008186; Chromosome.
DR GO; GO:0005737; C:cytoplasm; IEA:InterPro.
DR GO; GO:0050440; F:2-methylcitrate synthase activity; IDA:UniProtKB.
DR GO; GO:0004108; F:citrate (Si)-synthase activity; IBA:GO_Central.
DR GO; GO:0036440; F:citrate synthase activity; ISS:UniProtKB.
DR GO; GO:0005975; P:carbohydrate metabolic process; IBA:GO_Central.
DR GO; GO:0019679; P:propionate metabolic process, methylcitrate cycle; IBA:GO_Central.
DR GO; GO:0006099; P:tricarboxylic acid cycle; IBA:GO_Central.
DR Gene3D; 1.10.230.10; -; 1.
DR Gene3D; 1.10.580.10; -; 1.
DR InterPro; IPR011278; 2-MeCitrate/Citrate_synth_II.
DR InterPro; IPR016142; Citrate_synth-like_lrg_a-sub.
DR InterPro; IPR016143; Citrate_synth-like_sm_a-sub.
DR InterPro; IPR002020; Citrate_synthase.
DR InterPro; IPR019810; Citrate_synthase_AS.
DR InterPro; IPR024176; Citrate_synthase_bac-typ.
DR InterPro; IPR036969; Citrate_synthase_sf.
DR PANTHER; PTHR11739; PTHR11739; 1.
DR Pfam; PF00285; Citrate_synt; 1.
DR PIRSF; PIRSF001369; Citrate_synth; 1.
DR PRINTS; PR00143; CITRTSNTHASE.
DR SUPFAM; SSF48256; SSF48256; 1.
DR TIGRFAMs; TIGR01800; cit_synth_II; 1.
DR PROSITE; PS00480; CITRATE_SYNTHASE; 1.
PE 3: Inferred from homology;
KW Reference proteome; Transferase; Tricarboxylic acid cycle.
FT CHAIN 1..375
FT /note="2-methylcitrate synthase"
FT /id="PRO_0000432971"
FT ACT_SITE 222
FT /evidence="ECO:0000250|UniProtKB:O34002"
FT ACT_SITE 261
FT /evidence="ECO:0000250|UniProtKB:O34002"
FT ACT_SITE 312
FT /evidence="ECO:0000250|UniProtKB:O34002"
FT BINDING 72
FT /ligand="substrate"
FT /evidence="ECO:0000250|UniProtKB:I6Y9Q3"
FT BINDING 187
FT /ligand="substrate"
FT /evidence="ECO:0000250|UniProtKB:I6Y9Q3"
FT BINDING 255..259
FT /ligand="CoA"
FT /ligand_id="ChEBI:CHEBI:57287"
FT /evidence="ECO:0000250|UniProtKB:O34002"
FT BINDING 270
FT /ligand="substrate"
FT /evidence="ECO:0000250|UniProtKB:I6Y9Q3"
FT BINDING 337
FT /ligand="substrate"
FT /evidence="ECO:0000250|UniProtKB:I6Y9Q3"
FT BINDING 356
FT /ligand="substrate"
FT /evidence="ECO:0000250|UniProtKB:I6Y9Q3"
SQ SEQUENCE 375 AA; 41431 MW; C41B9ED9842F7986 CRC64;
MSDAKKLTGA GLRGQSAGET ALSTVGVSGS GLTYRGYDVK DLAENATFEE VAYLILYGEL
PTTAQLAAYK TKLKGMRGLP QALKEVLERI PADAHPMDVM RTGCSMLGNL EAEHSFSEQS
QIADRLLAAF PSIICYWYRF SHDGVRIDTE TDDDQIGAHF LHLLHGKAPS ALHTKVMDVS
LILYAEHEFN ASTFTARVCA STLSDMHSCV TGAIGSLRGP LHGGANEAAM ELIQDMKDEA
DARDVLMGKL ERKEKIMGFG HAIYRDSDPR NAIIKEWSEK LAADYGDDRL YRVSVACEAL
MWEQKKLFCN ADFFHASAYH FMGIPTKLFT PIFVCSRVTG WTAHVMEQRS NNRIIRPSAD
YVGVSPRKVI PIANR