PRR1_ORYSJ
ID PRR1_ORYSJ Reviewed; 518 AA.
AC Q689G9; A0A0P0VLS5; Q0DZH6; Q6K951;
DT 05-JUL-2005, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2005, sequence version 2.
DT 03-AUG-2022, entry version 110.
DE RecName: Full=Two-component response regulator-like PRR1;
DE AltName: Full=Pseudo-response regulator 1;
DE Short=OsPRR1;
GN Name=PRR1;
GN OrderedLocusNames=Os02g0618200 {ECO:0000312|EMBL:BAF09362.1},
GN LOC_Os02g40510 {ECO:0000305};
GN ORFNames=OJ1014_H03.23, OJ1212_C01.9,
GN OsJ_07546 {ECO:0000312|EMBL:EEE57385.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], AND INDUCTION.
RC STRAIN=cv. Nipponbare;
RX PubMed=14634161; DOI=10.1093/pcp/pcg135;
RA Murakami M., Ashikari M., Miura K., Yamashino T., Mizuno T.;
RT "The evolutionarily conserved OsPRR quintet: rice pseudo-response
RT regulators implicated in circadian rhythm.";
RL Plant Cell Physiol. 44:1229-1236(2003).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP INDUCTION.
RX PubMed=15725670; DOI=10.1271/bbb.69.410;
RA Murakami M., Matsushika A., Ashikari M., Yamashino T., Mizuno T.;
RT "Circadian-associated rice pseudo response regulators (OsPRRs): insight
RT into the control of flowering time.";
RL Biosci. Biotechnol. Biochem. 69:410-414(2005).
RN [7]
RP INTERACTION WITH PIL13.
RX PubMed=17485859; DOI=10.1271/bbb.60643;
RA Nakamura Y., Kato T., Yamashino T., Murakami M., Mizuno T.;
RT "Characterization of a set of phytochrome-interacting factor-like bHLH
RT proteins in Oryza sativa.";
RL Biosci. Biotechnol. Biochem. 71:1183-1191(2007).
RN [8]
RP INTERACTION WITH PIL13 AND PIL15, AND SUBCELLULAR LOCATION.
RC STRAIN=cv. Zhonghua 11;
RX PubMed=21549224; DOI=10.1016/j.nbt.2011.04.006;
RA Zhao X.L., Shi Z.Y., Peng L.T., Shen G.Z., Zhang J.L.;
RT "An atypical HLH protein OsLF in rice regulates flowering time and
RT interacts with OsPIL13 and OsPIL15.";
RL New Biotechnol. 28:788-797(2011).
CC -!- FUNCTION: Controls photoperiodic flowering response. Seems to be one of
CC the component of the circadian clock. Expression of several members of
CC the ARR-like family is controlled by circadian rhythm. The particular
CC coordinated sequential expression of PRR73, PRR37, PRR95, PRR59 and
CC PPR1 result to circadian waves that may be at the basis of the
CC endogenous circadian clock (By similarity). {ECO:0000250}.
CC -!- SUBUNIT: Interacts with PIL13 (PubMed:17485859, PubMed:21549224).
CC Interacts with PIL15 (PubMed:21549224). {ECO:0000269|PubMed:17485859,
CC ECO:0000269|PubMed:21549224}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00357,
CC ECO:0000269|PubMed:21549224}.
CC -!- INDUCTION: Expressed with a circadian rhythm showing a broad peak in
CC the late day. {ECO:0000269|PubMed:14634161,
CC ECO:0000269|PubMed:15725670}.
CC -!- SIMILARITY: Belongs to the ARR-like family. {ECO:0000305}.
CC -!- CAUTION: Lacks the phospho-accepting Asp (here Glu-80), present in the
CC receiver domain, which is one of the conserved features of the two-
CC component response regulators (ARRs) family. {ECO:0000305}.
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DR EMBL; AB189038; BAD38854.1; -; mRNA.
DR EMBL; AP003980; BAD21456.1; -; Genomic_DNA.
DR EMBL; AP004083; BAD21598.1; -; Genomic_DNA.
DR EMBL; AP008208; BAF09362.1; -; Genomic_DNA.
DR EMBL; AP014958; BAS79797.1; -; Genomic_DNA.
DR EMBL; CM000139; EEE57385.1; -; Genomic_DNA.
DR RefSeq; XP_015626003.1; XM_015770517.1.
DR AlphaFoldDB; Q689G9; -.
DR SMR; Q689G9; -.
DR IntAct; Q689G9; 2.
DR STRING; 4530.OS02T0618200-01; -.
DR PaxDb; Q689G9; -.
DR PRIDE; Q689G9; -.
DR EnsemblPlants; Os02t0618200-01; Os02t0618200-01; Os02g0618200.
DR GeneID; 4330000; -.
DR Gramene; Os02t0618200-01; Os02t0618200-01; Os02g0618200.
DR KEGG; osa:4330000; -.
DR eggNOG; KOG1601; Eukaryota.
DR HOGENOM; CLU_041215_0_0_1; -.
DR InParanoid; Q689G9; -.
DR OMA; NQHEYES; -.
DR OrthoDB; 952254at2759; -.
DR PlantReactome; R-OSA-8933811; Circadian rhythm.
DR Proteomes; UP000000763; Chromosome 2.
DR Proteomes; UP000007752; Chromosome 2.
DR Proteomes; UP000059680; Chromosome 2.
DR Genevisible; Q689G9; OS.
DR GO; GO:0005634; C:nucleus; IDA:UniProtKB.
DR GO; GO:0009736; P:cytokinin-activated signaling pathway; IEA:InterPro.
DR GO; GO:0000160; P:phosphorelay signal transduction system; IEA:UniProtKB-KW.
DR GO; GO:0048511; P:rhythmic process; IEA:UniProtKB-KW.
DR InterPro; IPR045279; ARR-like.
DR InterPro; IPR010402; CCT_domain.
DR InterPro; IPR011006; CheY-like_superfamily.
DR InterPro; IPR001789; Sig_transdc_resp-reg_receiver.
DR PANTHER; PTHR43874; PTHR43874; 1.
DR Pfam; PF06203; CCT; 1.
DR Pfam; PF00072; Response_reg; 1.
DR SMART; SM00448; REC; 1.
DR SUPFAM; SSF52172; SSF52172; 1.
DR PROSITE; PS51017; CCT; 1.
DR PROSITE; PS50110; RESPONSE_REGULATORY; 1.
PE 1: Evidence at protein level;
KW Biological rhythms; Nucleus; Reference proteome; Transcription;
KW Transcription regulation; Two-component regulatory system.
FT CHAIN 1..518
FT /note="Two-component response regulator-like PRR1"
FT /id="PRO_0000081442"
FT DOMAIN 29..147
FT /note="Response regulatory"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00169"
FT DOMAIN 443..485
FT /note="CCT"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00357"
FT REGION 172..241
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 266..305
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 483..518
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 286..301
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 18
FT /note="G -> E (in Ref. 1; BAD38854)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 518 AA; 57878 MW; 04A78665033A13D8 CRC64;
MVGAGEGDRV GGGAAVGGGQ QFVDRSKVRI LLCDSDPSSS REVLRLLCNC SYQVTCAKSP
RQVINVLNCE AGEIDIILAE VDLPVSKCFK MLKYIARNKE LRHIPIIMMS NRDEVSVVVK
CLRLGAAEYL VKPLRMNELL NLWTHVWRRR RMLGLSEKNF FNDNFELALS EPSDANTNST
TLLSDDTDDK PKENINQETS TSNQHEYESN PSDAEPKQKG TPEGLLVSTE GGDQASSPGV
MFSRPIKTNL RVAESSAFLA YVKSSTPTTS SFDSELQKGG NRLDSSDHRG NFSSTTDRSD
TGTDVNIRDK EAFEMPVQYP VVCFSSSNLH LERSNEGQND ASGTPPVYHF PFYYPGMMDH
GMTHPPVQNF QGNINNAQVH TPQTLLPQYN VYPQCHGVSM MPPFQYNPAG MSIQSNQLPT
QNMWPQASST PMPEETCSRS ERRAAALAKF RLKRKERCFD KKVRYVNRKK LAETRPRVRG
QFVRQANYTD ITSTGDDISE DEDDDPSSRE VEMVSSPE
