PSA_MYCS2
ID PSA_MYCS2 Reviewed; 246 AA.
AC A0QZ46; I7G3V1; O30519;
DT 22-SEP-2009, integrated into UniProtKB/Swiss-Prot.
DT 09-JAN-2007, sequence version 1.
DT 25-MAY-2022, entry version 105.
DE RecName: Full=Proteasome subunit alpha {ECO:0000255|HAMAP-Rule:MF_00289};
DE AltName: Full=20S proteasome alpha subunit {ECO:0000255|HAMAP-Rule:MF_00289};
DE AltName: Full=Proteasome core protein PrcA {ECO:0000255|HAMAP-Rule:MF_00289};
GN Name=prcA {ECO:0000255|HAMAP-Rule:MF_00289};
GN OrderedLocusNames=MSMEG_3894, MSMEI_3804;
OS Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium
OS smegmatis).
OC Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae;
OC Mycolicibacterium.
OX NCBI_TaxID=246196;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], FUNCTION, CATALYTIC ACTIVITY, ACTIVITY
RP REGULATION, AND DISRUPTION PHENOTYPE.
RX PubMed=9282749; DOI=10.1046/j.1365-2958.1997.4721837.x;
RA Knipfer N., Shrader T.E.;
RT "Inactivation of the 20S proteasome in Mycobacterium smegmatis.";
RL Mol. Microbiol. 25:375-383(1997).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 700084 / mc(2)155;
RA Fleischmann R.D., Dodson R.J., Haft D.H., Merkel J.S., Nelson W.C.,
RA Fraser C.M.;
RL Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases.
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 700084 / mc(2)155;
RX PubMed=17295914; DOI=10.1186/gb-2007-8-2-r20;
RA Deshayes C., Perrodou E., Gallien S., Euphrasie D., Schaeffer C.,
RA Van-Dorsselaer A., Poch O., Lecompte O., Reyrat J.-M.;
RT "Interrupted coding sequences in Mycobacterium smegmatis: authentic
RT mutations or sequencing errors?";
RL Genome Biol. 8:R20.1-R20.9(2007).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 700084 / mc(2)155;
RX PubMed=18955433; DOI=10.1101/gr.081901.108;
RA Gallien S., Perrodou E., Carapito C., Deshayes C., Reyrat J.-M.,
RA Van Dorsselaer A., Poch O., Schaeffer C., Lecompte O.;
RT "Ortho-proteogenomics: multiple proteomes investigation through orthology
RT and a new MS-based protocol.";
RL Genome Res. 19:128-135(2009).
RN [5]
RP FUNCTION, CATALYTIC ACTIVITY, PROTEIN SUBSTRATES, AND DISRUPTION PHENOTYPE.
RX PubMed=19028679; DOI=10.1074/jbc.m808032200;
RA Burns K.E., Liu W.-T., Boshoff H.I.M., Dorrestein P.C., Barry C.E. III;
RT "Proteasomal protein degradation in mycobacteria is dependent upon a
RT prokaryotic ubiquitin-like protein.";
RL J. Biol. Chem. 284:3069-3075(2009).
RN [6]
RP FUNCTION, DISRUPTION PHENOTYPE, ACTIVITY REGULATION, INDUCTION, AND
RP PUPYLATION.
RC STRAIN=ATCC 700084 / mc(2)155;
RX PubMed=24986881; DOI=10.15252/embj.201387076;
RA Elharar Y., Roth Z., Hermelin I., Moon A., Peretz G., Shenkerman Y.,
RA Vishkautzan M., Khalaila I., Gur E.;
RT "Survival of mycobacteria depends on proteasome-mediated amino acid
RT recycling under nutrient limitation.";
RL EMBO J. 33:1802-1814(2014).
RN [7]
RP INTERACTION WITH BPA.
RC STRAIN=ATCC 700084 / mc(2)155;
RX PubMed=25469515; DOI=10.1371/journal.pone.0114348;
RA Delley C.L., Laederach J., Ziemski M., Bolten M., Boehringer D.,
RA Weber-Ban E.;
RT "Bacterial proteasome activator Bpa (Rv3780) is a novel ring-shaped
RT interactor of the mycobacterial proteasome.";
RL PLoS ONE 9:E114348-E114348(2014).
CC -!- FUNCTION: Component of the proteasome core, a large protease complex
CC with broad specificity involved in protein degradation. The M.smegmatis
CC proteasome is able to cleave oligopeptides after hydrophobic residues,
CC thus displaying chymotrypsin-like activity. In complex with the ATPase
CC Mpa, degrades protein targets conjugated to a prokaryotic ubiquitin-
CC like protein (Pup). Identified substrates of the M.smegmatis proteasome
CC are the pupylated SodA and Ino1 proteins (PubMed:19028679). The Pup-
CC proteasome system (PPS) is essential for survival under starvation; PPS
CC likely functions to recycle amino acids under nitrogen starvation,
CC thereby enabling the cell to maintain basal metabolic activities
CC (PubMed:24986881). {ECO:0000255|HAMAP-Rule:MF_00289,
CC ECO:0000269|PubMed:19028679, ECO:0000269|PubMed:24986881,
CC ECO:0000269|PubMed:9282749}.
CC -!- ACTIVITY REGULATION: The formation of the proteasomal ATPase ARC-20S
CC proteasome complex, likely via the docking of the C-termini of ARC into
CC the intersubunit pockets in the alpha-rings, may trigger opening of the
CC gate for substrate entry. Interconversion between the open-gate and
CC close-gate conformations leads to a dynamic regulation of the 20S
CC proteasome proteolysis activity (By similarity). PPS auto-regulates its
CC own activity via pupylation and degradation of its components
CC (PubMed:24986881). Peptidolytic activity is inhibited by N-acetyl-Leu-
CC Leu-norleucinal (Ac-LLnL) in vitro (PubMed:9282749).
CC {ECO:0000255|HAMAP-Rule:MF_00289, ECO:0000269|PubMed:24986881,
CC ECO:0000269|PubMed:9282749}.
CC -!- PATHWAY: Protein degradation; proteasomal Pup-dependent pathway.
CC {ECO:0000255|HAMAP-Rule:MF_00289}.
CC -!- SUBUNIT: The 20S proteasome core is composed of 14 alpha and 14 beta
CC subunits that assemble into four stacked heptameric rings, resulting in
CC a barrel-shaped structure. The two inner rings, each composed of seven
CC catalytic beta subunits, are sandwiched by two outer rings, each
CC composed of seven alpha subunits. The catalytic chamber with the active
CC sites is on the inside of the barrel. Has a gated structure, the ends
CC of the cylinder being occluded by the N-termini of the alpha-subunits.
CC Is capped by the proteasome-associated ATPase, ARC. Can also interact
CC with the bacterial proteasome activator Bpa through the C-terminal
CC hydrophobic-tyrosine-X motif (HbYX motif) of Bpa; Bpa forms a
CC homooligomeric ring-like structure which stacks co-axially with the
CC proteasomal alpha-rings (PubMed:25469515). {ECO:0000255|HAMAP-
CC Rule:MF_00289, ECO:0000269|PubMed:25469515}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00289}.
CC -!- INDUCTION: Up-regulated under nitrogen starvation (at protein level).
CC {ECO:0000269|PubMed:24986881}.
CC -!- PTM: Pupylated at an undetermined lysine residue by the prokaryotic
CC ubiquitin-like protein Pup with the help of the ligase PafA, which
CC leads to its degradation by the proteasome and thereby constitutes a
CC negative auto-regulation. {ECO:0000269|PubMed:24986881}.
CC -!- DISRUPTION PHENOTYPE: Cells lacking this gene are viable and grow at
CC the wild-type rate, but show a large reduction in the rate of
CC degradation of the pupylated substrates (PubMed:19028679,
CC PubMed:9282749). Cells lacking the Pup-proteasome system (pup/prcS,
CC prcA and prcB) completely lack pupylated proteins and intact
CC proteasomes; they grow as well as wild-type during the exponential
CC phase, but they show reduced survival after prolonged incubation at
CC stationary phase (17 days after inoculation) and become hypersensitive
CC to nitrogen limitation, and, to a lesser extent, to carbon limitation
CC (PubMed:24986881). {ECO:0000269|PubMed:19028679,
CC ECO:0000269|PubMed:24986881, ECO:0000269|PubMed:9282749}.
CC -!- SIMILARITY: Belongs to the peptidase T1A family. {ECO:0000255|HAMAP-
CC Rule:MF_00289}.
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DR EMBL; AF009645; AAC45615.1; -; Genomic_DNA.
DR EMBL; CP000480; ABK70795.1; -; Genomic_DNA.
DR EMBL; CP001663; AFP40262.1; -; Genomic_DNA.
DR RefSeq; WP_003895345.1; NZ_SIJM01000005.1.
DR RefSeq; YP_888184.1; NC_008596.1.
DR AlphaFoldDB; A0QZ46; -.
DR SMR; A0QZ46; -.
DR STRING; 246196.MSMEI_3804; -.
DR MEROPS; T01.980; -.
DR PRIDE; A0QZ46; -.
DR EnsemblBacteria; ABK70795; ABK70795; MSMEG_3894.
DR EnsemblBacteria; AFP40262; AFP40262; MSMEI_3804.
DR GeneID; 66735261; -.
DR KEGG; msg:MSMEI_3804; -.
DR KEGG; msm:MSMEG_3894; -.
DR PATRIC; fig|246196.19.peg.3834; -.
DR eggNOG; COG0638; Bacteria.
DR OMA; QIYRLPH; -.
DR OrthoDB; 1243753at2; -.
DR UniPathway; UPA00997; -.
DR Proteomes; UP000000757; Chromosome.
DR Proteomes; UP000006158; Chromosome.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0019773; C:proteasome core complex, alpha-subunit complex; ISS:UniProtKB.
DR GO; GO:0004298; F:threonine-type endopeptidase activity; IEA:InterPro.
DR GO; GO:0019941; P:modification-dependent protein catabolic process; IEA:UniProtKB-UniRule.
DR GO; GO:0010498; P:proteasomal protein catabolic process; IEA:UniProtKB-UniRule.
DR Gene3D; 3.60.20.10; -; 1.
DR HAMAP; MF_00289_B; Proteasome_A_B; 1.
DR InterPro; IPR029055; Ntn_hydrolases_N.
DR InterPro; IPR023332; Proteasome_alpha-type.
DR InterPro; IPR022296; Proteasome_asu_bac.
DR InterPro; IPR001353; Proteasome_sua/b.
DR PANTHER; PTHR11599:SF69; PTHR11599:SF69; 1.
DR Pfam; PF00227; Proteasome; 1.
DR SUPFAM; SSF56235; SSF56235; 1.
DR TIGRFAMs; TIGR03691; 20S_bact_alpha; 1.
DR PROSITE; PS51475; PROTEASOME_ALPHA_2; 1.
PE 1: Evidence at protein level;
KW Cytoplasm; Proteasome; Reference proteome; Ubl conjugation.
FT CHAIN 1..246
FT /note="Proteasome subunit alpha"
FT /id="PRO_0000383483"
SQ SEQUENCE 246 AA; 26915 MW; 7869013FEFD30231 CRC64;
MSFPYFISPE QAMRERSELA RKGIARGRSV VALAYSEGVL FVAENPSRSL QKVSELYDRV
GFAAVGRFNE FDNLRRGGIQ FADTRGYAYD RRDVTGRQLA NVYAQTLGTI FTEQAKPYEV
ELCVAEVAHY GETKAPELYR ITYDGSIADE PHFVVMGGTT EPIIAALNES YTENASLQDA
VEIAVKALSA SAEGAEPRSL GPSTLEVAIL DAGRPRRAFR RITGAALEAL LPEQPQQADS
GDKPTE
