PSB28_ORYSJ
ID PSB28_ORYSJ Reviewed; 180 AA.
AC Q0JG75; A3A1D0; Q5JMJ8; Q8S4X8;
DT 09-JAN-2007, integrated into UniProtKB/Swiss-Prot.
DT 09-JAN-2007, sequence version 2.
DT 03-AUG-2022, entry version 94.
DE RecName: Full=Photosystem II reaction center PSB28 protein, chloroplastic;
DE AltName: Full=Photosystem II protein W-like;
DE Flags: Precursor;
GN Name=PSB28; OrderedLocusNames=Os01g0938100, LOC_Os01g71190;
GN ORFNames=OsJ_04705 {ECO:0000312|EMBL:EAZ14777.1}, P0504E02.24;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RG The rice full-length cDNA consortium;
RT "Oryza sativa full length cDNA.";
RL Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases.
RN [7]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 83-180.
RA Pillai A., Seiji Y.;
RT "Molecular cloning of salt responsive gene in rice, OSSRII.";
RL Submitted (MAR-2001) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBUNIT: Part of the photosystem II complex. {ECO:0000305}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast thylakoid membrane
CC {ECO:0000250}; Peripheral membrane protein {ECO:0000250}; Stromal side
CC {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the Psb28 family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAF07253.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AP003269; BAD87310.1; -; Genomic_DNA.
DR EMBL; AP008207; BAF07253.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014957; BAS76131.1; -; Genomic_DNA.
DR EMBL; CM000138; EAZ14777.1; -; Genomic_DNA.
DR EMBL; AK242889; BAH01372.1; -; mRNA.
DR EMBL; AF366557; AAM00366.1; -; mRNA.
DR RefSeq; XP_015650407.1; XM_015794921.1.
DR AlphaFoldDB; Q0JG75; -.
DR SMR; Q0JG75; -.
DR STRING; 4530.OS01T0938100-01; -.
DR PaxDb; Q0JG75; -.
DR PRIDE; Q0JG75; -.
DR EnsemblPlants; Os01t0938100-01; Os01t0938100-01; Os01g0938100.
DR GeneID; 4326537; -.
DR Gramene; Os01t0938100-01; Os01t0938100-01; Os01g0938100.
DR KEGG; osa:4326537; -.
DR eggNOG; ENOG502RMFI; Eukaryota.
DR HOGENOM; CLU_098454_0_0_1; -.
DR InParanoid; Q0JG75; -.
DR OMA; MERYANS; -.
DR OrthoDB; 1564092at2759; -.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000007752; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 1.
DR Genevisible; Q0JG75; OS.
DR GO; GO:0009535; C:chloroplast thylakoid membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0009654; C:photosystem II oxygen evolving complex; IEA:InterPro.
DR GO; GO:0015979; P:photosynthesis; IEA:UniProtKB-KW.
DR Gene3D; 2.40.30.220; -; 1.
DR HAMAP; MF_01370; PSII_Psb28; 1.
DR InterPro; IPR038676; Psb28_c1_sf.
DR InterPro; IPR005610; PSII_Psb28_class-1.
DR PANTHER; PTHR34963; PTHR34963; 1.
DR Pfam; PF03912; Psb28; 1.
DR TIGRFAMs; TIGR03047; PS_II_psb28; 1.
PE 2: Evidence at transcript level;
KW Chloroplast; Membrane; Photosynthesis; Photosystem II; Plastid;
KW Reference proteome; Thylakoid; Transit peptide.
FT TRANSIT 1..64
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 65..180
FT /note="Photosystem II reaction center PSB28 protein,
FT chloroplastic"
FT /id="PRO_0000271578"
FT REGION 16..39
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 83
FT /note="I -> L (in Ref. 7; AAM00366)"
FT /evidence="ECO:0000305"
FT CONFLICT 92
FT /note="R -> G (in Ref. 7; AAM00366)"
FT /evidence="ECO:0000305"
FT CONFLICT 96
FT /note="N -> K (in Ref. 7; AAM00366)"
FT /evidence="ECO:0000305"
FT CONFLICT 114
FT /note="E -> K (in Ref. 7; AAM00366)"
FT /evidence="ECO:0000305"
FT CONFLICT 174
FT /note="G -> V (in Ref. 7; AAM00366)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 180 AA; 19737 MW; 0DE83A590660BD77 CRC64;
MAAVMKALAV ASPISARAQP RRCPAGSSGG PSQSLHSSFG GVSLQCRRTK PASLHRSRPS
MQVVMMAARP AIQFIQGTDE QTIPDVRLTK SRDGTNGVAI FTFDQPSVFD SSAELGDITG
FYMIDDEGVL QSVDVSAKFV NGKPALIEAK YVMRTPREWD RFMRFMERYS QANGLQFVKK
