ID   ATG8D_ORYSJ             Reviewed;         118 AA.
AC   Q2RBS4; Q0IVB0;
DT   15-MAY-2007, integrated into UniProtKB/Swiss-Prot.
DT   11-JUL-2006, sequence version 2.
DT   03-AUG-2022, entry version 95.
DE   RecName: Full=Autophagy-related protein 8D;
DE   AltName: Full=Autophagy-related ubiquitin-like modifier ATG8D;
GN   Name=ATG8D; Synonyms=APG8D; OrderedLocusNames=Os11g0100100, LOC_Os11g01010;
GN   ORFNames=OSJNBa0029D01;
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG   The rice chromosomes 11 and 12 sequencing consortia;
RT   "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT   genes and recent gene duplications.";
RL   BMC Biol. 3:20-20(2005).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [4]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA   Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA   Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA   Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using next
RT   generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
CC   -!- FUNCTION: Ubiquitin-like modifier involved in autophagosomes formation.
CC       May mediate the delivery of the autophagosomes to the vacuole via the
CC       microtubule cytoskeleton. {ECO:0000250|UniProtKB:P38182}.
CC   -!- SUBUNIT: Interacts with ATG4. {ECO:0000250|UniProtKB:Q2XPP5}.
CC   -!- SUBCELLULAR LOCATION: Cytoplasmic vesicle, autophagosome membrane
CC       {ECO:0000250|UniProtKB:P38182}; Lipid-anchor
CC       {ECO:0000250|UniProtKB:P38182}. Vacuole membrane
CC       {ECO:0000250|UniProtKB:P38182}; Lipid-anchor
CC       {ECO:0000250|UniProtKB:P38182}. Cytoplasm, cytoskeleton
CC       {ECO:0000250|UniProtKB:Q8LEM4}.
CC   -!- PTM: The C-terminal Gly is amidated with phosphatidylethanolamine by an
CC       activating system similar to that for ubiquitin.
CC       {ECO:0000250|UniProtKB:P38182}.
CC   -!- SIMILARITY: Belongs to the ATG8 family. {ECO:0000305}.
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DR   EMBL; DP000010; ABA91071.2; -; Genomic_DNA.
DR   EMBL; AP008217; BAF27355.2; -; Genomic_DNA.
DR   EMBL; AP014967; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   RefSeq; XP_015617729.1; XM_015762243.1.
DR   AlphaFoldDB; Q2RBS4; -.
DR   SMR; Q2RBS4; -.
DR   STRING; 39947.Q2RBS4; -.
DR   PaxDb; Q2RBS4; -.
DR   PRIDE; Q2RBS4; -.
DR   GeneID; 4349525; -.
DR   KEGG; osa:4349525; -.
DR   InParanoid; Q2RBS4; -.
DR   OrthoDB; 1508198at2759; -.
DR   Proteomes; UP000000763; Chromosome 11.
DR   Proteomes; UP000059680; Chromosome 11.
DR   GO; GO:0000421; C:autophagosome membrane; IEA:UniProtKB-SubCell.
DR   GO; GO:0031410; C:cytoplasmic vesicle; IEA:UniProtKB-KW.
DR   GO; GO:0005874; C:microtubule; IEA:UniProtKB-KW.
DR   GO; GO:0006914; P:autophagy; IEA:UniProtKB-KW.
DR   GO; GO:0006995; P:cellular response to nitrogen starvation; IBA:GO_Central.
DR   GO; GO:0015031; P:protein transport; IEA:UniProtKB-KW.
DR   InterPro; IPR004241; Atg8-like.
DR   InterPro; IPR029071; Ubiquitin-like_domsf.
DR   PANTHER; PTHR10969; PTHR10969; 1.
DR   Pfam; PF02991; ATG8; 1.
DR   SUPFAM; SSF54236; SSF54236; 1.
PE   3: Inferred from homology;
KW   Autophagy; Cytoplasm; Cytoplasmic vesicle; Cytoskeleton; Lipoprotein;
KW   Membrane; Microtubule; Protein transport; Reference proteome; Transport;
KW   Ubl conjugation pathway; Vacuole.
FT   CHAIN           1..118
FT                   /note="Autophagy-related protein 8D"
FT                   /id="PRO_0000286933"
FT   LIPID           118
FT                   /note="Phosphatidylethanolamine amidated glycine"
FT                   /evidence="ECO:0000250|UniProtKB:P38182"
SQ   SEQUENCE   118 AA;  13570 MW;  2D8AB8092C7F8AB8 CRC64;
     MKPRPFKEEF TLEERAKESA AMIASYPDRI PVIVEKFSRS NLPEMEKRKY LVPCNMPVGQ
     FIFILRSRLH LSPGTALFVF VNNTLPQTAQ LMGSVYESYK DEGDGFLYLC YSSEKTFG