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ATG9A_PONAB
ID   ATG9A_PONAB             Reviewed;         839 AA.
AC   Q5RCS0;
DT   12-APR-2005, integrated into UniProtKB/Swiss-Prot.
DT   21-DEC-2004, sequence version 1.
DT   03-AUG-2022, entry version 75.
DE   RecName: Full=Autophagy-related protein 9A {ECO:0000305};
DE   AltName: Full=APG9-like 1 {ECO:0000250|UniProtKB:Q7Z3C6};
GN   Name=ATG9A {ECO:0000250|UniProtKB:Q7Z3C6};
GN   Synonyms=APG9L1 {ECO:0000250|UniProtKB:Q7Z3C6};
OS   Pongo abelii (Sumatran orangutan) (Pongo pygmaeus abelii).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Pongo.
OX   NCBI_TaxID=9601;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   TISSUE=Brain cortex;
RG   The German cDNA consortium;
RL   Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: Phospholipid scramblase involved in autophagy by mediating
CC       autophagosomal membrane expansion. Cycles between the preautophagosomal
CC       structure/phagophore assembly site (PAS) and the cytoplasmic vesicle
CC       pool and supplies membrane for the growing autophagosome. Lipid
CC       scramblase activity plays a key role in preautophagosomal
CC       structure/phagophore assembly by distributing the phospholipids that
CC       arrive through ATG2 (ATG2A or ATG2B) from the cytoplasmic to the
CC       luminal leaflet of the bilayer, thereby driving autophagosomal membrane
CC       expansion. Also required to supply phosphatidylinositol 4-phosphate to
CC       the autophagosome initiation site by recruiting the
CC       phosphatidylinositol 4-kinase beta (PI4KB) in a process dependent on
CC       ARFIP2, but not ARFIP1 (By similarity). In addition to autophagy, also
CC       plays a role in necrotic cell death (By similarity).
CC       {ECO:0000250|UniProtKB:Q68FE2, ECO:0000250|UniProtKB:Q7Z3C6}.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=a 1,2-diacyl-sn-glycero-3-phosphocholine(in) = a 1,2-diacyl-
CC         sn-glycero-3-phosphocholine(out); Xref=Rhea:RHEA:38571,
CC         ChEBI:CHEBI:57643; Evidence={ECO:0000250|UniProtKB:Q7Z3C6};
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=a 1,2-diacyl-sn-glycero-3-phospho-L-serine(in) = a 1,2-diacyl-
CC         sn-glycero-3-phospho-L-serine(out); Xref=Rhea:RHEA:38663,
CC         ChEBI:CHEBI:57262; Evidence={ECO:0000250|UniProtKB:Q7Z3C6};
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=a 1,2-diacyl-sn-glycero-3-phosphoethanolamine(in) = a 1,2-
CC         diacyl-sn-glycero-3-phosphoethanolamine(out); Xref=Rhea:RHEA:38895,
CC         ChEBI:CHEBI:64612; Evidence={ECO:0000250|UniProtKB:Q7Z3C6};
CC   -!- SUBUNIT: Homotrimer; forms a homotrimer with a central pore that forms
CC       a path between the two membrane leaflets. Interacts (via cytoplasmic
CC       its C-terminus) with ATG2A. Interacts with SUPT20H. Interacts (via the
CC       tyrosine-based sorting signal motif) with AP4M1; promoting association
CC       with the AP-4 complex. Interacts with ARFIP1 and ARFIP2. Interacts with
CC       PI4K2A and PI4KB. Interacts with ATG4A; the interaction is direct and
CC       promotes ATG9A trafficking. {ECO:0000250|UniProtKB:Q7Z3C6}.
CC   -!- SUBCELLULAR LOCATION: Preautophagosomal structure membrane
CC       {ECO:0000250|UniProtKB:Q7Z3C6}; Multi-pass membrane protein
CC       {ECO:0000250|UniProtKB:Q7Z3C6}. Cytoplasmic vesicle, autophagosome
CC       membrane {ECO:0000250|UniProtKB:Q7Z3C6}; Multi-pass membrane protein
CC       {ECO:0000250|UniProtKB:Q7Z3C6}. Golgi apparatus, trans-Golgi network
CC       membrane {ECO:0000250|UniProtKB:Q7Z3C6}; Multi-pass membrane protein
CC       {ECO:0000250|UniProtKB:Q7Z3C6}. Late endosome membrane
CC       {ECO:0000250|UniProtKB:Q7Z3C6}; Multi-pass membrane protein
CC       {ECO:0000250|UniProtKB:Q7Z3C6}. Recycling endosome membrane
CC       {ECO:0000250|UniProtKB:Q7Z3C6}; Multi-pass membrane protein
CC       {ECO:0000250|UniProtKB:Q7Z3C6}. Endoplasmic reticulum membrane
CC       {ECO:0000250|UniProtKB:Q7Z3C6}; Multi-pass membrane protein
CC       {ECO:0000250|UniProtKB:Q7Z3C6}. Mitochondrion membrane
CC       {ECO:0000250|UniProtKB:Q7Z3C6}; Multi-pass membrane protein
CC       {ECO:0000255}. Note=Mainly localizes to the trans-Golgi network (TGN)
CC       and the endosomal system; cycles between them though vesicle
CC       trafficking. Export from the TGN to promote formation of autophagosomes
CC       is mediated by the AP-4 complex. Under amino acid starvation or
CC       rapamycin treatment, redistributes to preautophagosomal
CC       structure/phagophore assembly site (PAS). The starvation-induced
CC       redistribution depends on ULK1, ATG13, as well as SH3GLB1. Upon
CC       autophagy induction, a small portion transiently localizes to the
CC       autophagic membranes. Recruited to damaged mitochondria during
CC       mitophagy in a RIMOC1-dependent manner. {ECO:0000250|UniProtKB:Q7Z3C6}.
CC   -!- DOMAIN: Forms a homotrimer with a solvated central pore, which is
CC       connected laterally to the cytosol through the cavity within each
CC       protomer. Acts as a lipid scramblase that uses its central pore to
CC       function: the central pore opens laterally to accommodate lipid
CC       headgroups, thereby enabling lipid flipping and redistribution of
CC       lipids added to the outer leaflet of ATG9A-containing vesicles, thereby
CC       enabling growth into autophagosomes. {ECO:0000250|UniProtKB:Q7Z3C6}.
CC   -!- DOMAIN: The tyrosine-based sorting signal motif, also named YXX-psi
CC       motif, promotes interaction with the AP-4 complex.
CC       {ECO:0000250|UniProtKB:Q7Z3C6}.
CC   -!- SIMILARITY: Belongs to the ATG9 family. {ECO:0000305}.
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DR   EMBL; CR858199; CAH90437.1; -; mRNA.
DR   RefSeq; NP_001127287.1; NM_001133815.1.
DR   RefSeq; XP_009236371.1; XM_009238096.1.
DR   RefSeq; XP_009236372.1; XM_009238097.1.
DR   AlphaFoldDB; Q5RCS0; -.
DR   SMR; Q5RCS0; -.
DR   STRING; 9601.ENSPPYP00000014748; -.
DR   Ensembl; ENSPPYT00000015345; ENSPPYP00000014748; ENSPPYG00000013199.
DR   GeneID; 100174344; -.
DR   KEGG; pon:100174344; -.
DR   CTD; 79065; -.
DR   eggNOG; KOG2173; Eukaryota.
DR   GeneTree; ENSGT00390000014839; -.
DR   InParanoid; Q5RCS0; -.
DR   OrthoDB; 712239at2759; -.
DR   Proteomes; UP000001595; Chromosome 2B.
DR   GO; GO:0000421; C:autophagosome membrane; IEA:UniProtKB-SubCell.
DR   GO; GO:0005789; C:endoplasmic reticulum membrane; ISS:UniProtKB.
DR   GO; GO:0005794; C:Golgi apparatus; ISS:UniProtKB.
DR   GO; GO:0000139; C:Golgi membrane; ISS:UniProtKB.
DR   GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR   GO; GO:0031902; C:late endosome membrane; IEA:UniProtKB-SubCell.
DR   GO; GO:0031966; C:mitochondrial membrane; IEA:UniProtKB-SubCell.
DR   GO; GO:0005739; C:mitochondrion; ISS:UniProtKB.
DR   GO; GO:0034045; C:phagophore assembly site membrane; IEA:UniProtKB-SubCell.
DR   GO; GO:0055038; C:recycling endosome membrane; ISS:UniProtKB.
DR   GO; GO:0005802; C:trans-Golgi network; ISS:UniProtKB.
DR   GO; GO:0017128; F:phospholipid scramblase activity; ISS:UniProtKB.
DR   GO; GO:0000045; P:autophagosome assembly; ISS:UniProtKB.
DR   GO; GO:0060349; P:bone morphogenesis; ISS:UniProtKB.
DR   GO; GO:0010940; P:positive regulation of necrotic cell death; ISS:UniProtKB.
DR   InterPro; IPR007241; Autophagy-rel_prot_9.
DR   PANTHER; PTHR13038; PTHR13038; 1.
DR   Pfam; PF04109; ATG9; 1.
PE   2: Evidence at transcript level;
KW   Acetylation; Autophagy; Cytoplasmic vesicle; Endoplasmic reticulum;
KW   Endosome; Glycoprotein; Golgi apparatus; Lipid transport; Membrane;
KW   Mitochondrion; Phosphoprotein; Reference proteome; Transmembrane;
KW   Transmembrane helix; Transport.
FT   INIT_MET        1
FT                   /note="Removed"
FT                   /evidence="ECO:0000250|UniProtKB:Q7Z3C6"
FT   CHAIN           2..839
FT                   /note="Autophagy-related protein 9A"
FT                   /id="PRO_0000119822"
FT   TOPO_DOM        2..61
FT                   /note="Cytoplasmic"
FT                   /evidence="ECO:0000305"
FT   TRANSMEM        62..84
FT                   /note="Helical"
FT                   /evidence="ECO:0000250|UniProtKB:Q7Z3C6"
FT   TOPO_DOM        85..128
FT                   /note="Lumenal"
FT                   /evidence="ECO:0000305"
FT   TRANSMEM        129..154
FT                   /note="Helical"
FT                   /evidence="ECO:0000250|UniProtKB:Q7Z3C6"
FT   TOPO_DOM        155..290
FT                   /note="Cytoplasmic"
FT                   /evidence="ECO:0000305"
FT   INTRAMEM        291..301
FT                   /evidence="ECO:0000250|UniProtKB:Q7Z3C6"
FT   TOPO_DOM        302..319
FT                   /note="Cytoplasmic"
FT                   /evidence="ECO:0000305"
FT   INTRAMEM        320..328
FT                   /evidence="ECO:0000250|UniProtKB:Q7Z3C6"
FT   TOPO_DOM        329..371
FT                   /note="Cytoplasmic"
FT                   /evidence="ECO:0000305"
FT   TRANSMEM        372..397
FT                   /note="Helical"
FT                   /evidence="ECO:0000250|UniProtKB:Q7Z3C6"
FT   TOPO_DOM        398..406
FT                   /note="Lumenal"
FT                   /evidence="ECO:0000305"
FT   TRANSMEM        407..424
FT                   /note="Helical"
FT                   /evidence="ECO:0000250|UniProtKB:Q7Z3C6"
FT   TOPO_DOM        425..470
FT                   /note="Cytoplasmic"
FT                   /evidence="ECO:0000305"
FT   INTRAMEM        471..480
FT                   /evidence="ECO:0000250|UniProtKB:Q7Z3C6"
FT   TOPO_DOM        481..483
FT                   /note="Cytoplasmic"
FT                   /evidence="ECO:0000305"
FT   INTRAMEM        484..492
FT                   /evidence="ECO:0000250|UniProtKB:Q7Z3C6"
FT   TOPO_DOM        493..839
FT                   /note="Cytoplasmic"
FT                   /evidence="ECO:0000305"
FT   REGION          1..20
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          656..686
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          719..839
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   MOTIF           8..11
FT                   /note="Tyrosine-based sorting signal"
FT                   /evidence="ECO:0000250|UniProtKB:Q7Z3C6"
FT   COMPBIAS        720..740
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        818..839
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   MOD_RES         2
FT                   /note="N-acetylalanine"
FT                   /evidence="ECO:0000250|UniProtKB:Q7Z3C6"
FT   MOD_RES         14
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0000250|UniProtKB:Q7Z3C6"
FT   MOD_RES         16
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0000250|UniProtKB:Q68FE2"
FT   MOD_RES         18
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0000250|UniProtKB:Q7Z3C6"
FT   MOD_RES         656
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0000250|UniProtKB:Q7Z3C6"
FT   MOD_RES         735
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0000250|UniProtKB:Q7Z3C6"
FT   MOD_RES         738
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0000250|UniProtKB:Q7Z3C6"
FT   MOD_RES         741
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0000250|UniProtKB:Q7Z3C6"
FT   MOD_RES         828
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0000250|UniProtKB:Q7Z3C6"
FT   CARBOHYD        99
FT                   /note="N-linked (GlcNAc...) asparagine"
FT                   /evidence="ECO:0000255"
SQ   SEQUENCE   839 AA;  94433 MW;  D408C0B38877A163 CRC64;
     MAQFDTEYQR LEASYSDSPP GEEDLLVHVA EGSKSPWHHI ENLDLFFSRV YNLHQKNGFT
     CMLIGEIFEL MQFLFVVAFT TFLVSCVDYD ILFANKMVNH SLHPTEPVKV TLPDAFLPAQ
     VCSARIQENG SLITILVIAG VFWIHRLIKF IYNICCYWEI HSFYLHALRI PMSALPYCTW
     QEVQARIVQT QKEHQICIHK RELTELDIYH RILRFQNYMV ALVNKSLLPL RFRLPGLGEA
     VFFTRGLKYN FELILFWGPG SLFLNEWSLK AEYKRGGQRL ELAQRLSNRI LWIGIANFLL
     CPLILIWQIL YAFFSYAEVL KREPGALGAR CWSLYGRCYL RHFNELEHEL QSRLNRGYKP
     ASKYMNCFLS PLLTLLAKNG AFFAGSILAV LIALTIYDED VLAVEHVLTT VTLLGVTVTV
     CRSFIPDQHM VFCPEQLLRV ILAHIHYMPD HWQGNAHRSQ TRDEFAQLFQ YKAVFILEEL
     LSPIVTPLIL IFCLRPRALE IIDFFRNFTV EVVGVGDTCS FAQMDVRQHG HPQWLSAGQT
     EASVYQQAED GKTELSLMHF AITNPGWQPP RESTAFLGFL KEQVQRDGAA ASLAQGGLLP
     ENALFTSIQS LQSESEPLSL IANVVAGSSC RGPPLPRDLQ GSRHRAEVAS ALRSFSPLQP
     GQAPTGRAHS TMTGSGVDAR TASSGSSVWE GQLQSLVLSE YASTEMSLHA LYMHQLHKQQ
     AQAEPERHLW HRRESDESGE SAPDEGGEGA RAPQSIPRSA SYPCAAPRPG APETTALHGG
     FQRRYGGITD PGTVPRAPSH FSRLPLGGWA EDGQSASRHP EPVPEEGSED ELPPQVHKV
 
 
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