ATL31_ORYSJ
ID ATL31_ORYSJ Reviewed; 353 AA.
AC Q8H7N9; A0A0P0VTZ8;
DT 05-OCT-2010, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2003, sequence version 1.
DT 03-AUG-2022, entry version 130.
DE RecName: Full=E3 ubiquitin-protein ligase Os03g0188200;
DE EC=2.3.2.27 {ECO:0000250|UniProtKB:Q8LGA5};
DE AltName: Full=RING-H2 finger protein Os03g0188200;
DE AltName: Full=RING-type E3 ubiquitin transferase Os03g0188200 {ECO:0000305};
GN OrderedLocusNames=Os03g0188200, LOC_Os03g08920; ORFNames=OJ1217B09.7;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP FUNCTION.
RX PubMed=16186120; DOI=10.1074/jbc.m411127200;
RA Katoh S., Tsunoda Y., Murata K., Minami E., Katoh E.;
RT "Active site residues and amino acid specificity of the ubiquitin carrier
RT protein-binding RING-H2 finger domain.";
RL J. Biol. Chem. 280:41015-41024(2005).
CC -!- FUNCTION: Possesses E3 ubiquitin-protein ligase in vitro.
CC {ECO:0000269|PubMed:16186120}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine +
CC [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-
CC cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.;
CC EC=2.3.2.27; Evidence={ECO:0000250|UniProtKB:Q8LGA5};
CC -!- PATHWAY: Protein modification; protein ubiquitination.
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000305}; Single-pass membrane
CC protein {ECO:0000305}.
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DR EMBL; AC121489; AAN64141.1; -; Genomic_DNA.
DR EMBL; DP000009; ABF94379.1; -; Genomic_DNA.
DR EMBL; AP008209; BAF11130.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS82696.1; -; Genomic_DNA.
DR EMBL; AK058578; BAG86741.1; -; mRNA.
DR RefSeq; XP_015627803.1; XM_015772317.1.
DR AlphaFoldDB; Q8H7N9; -.
DR SMR; Q8H7N9; -.
DR PaxDb; Q8H7N9; -.
DR PRIDE; Q8H7N9; -.
DR EnsemblPlants; Os03t0188200-01; Os03t0188200-01; Os03g0188200.
DR GeneID; 4331886; -.
DR Gramene; Os03t0188200-01; Os03t0188200-01; Os03g0188200.
DR KEGG; osa:4331886; -.
DR eggNOG; KOG0800; Eukaryota.
DR HOGENOM; CLU_728383_0_0_1; -.
DR InParanoid; Q8H7N9; -.
DR OMA; ARPHEFH; -.
DR OrthoDB; 1487241at2759; -.
DR UniPathway; UPA00143; -.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR Genevisible; Q8H7N9; OS.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0004842; F:ubiquitin-protein transferase activity; IDA:UniProtKB.
DR GO; GO:0044260; P:cellular macromolecule metabolic process; IEA:UniProt.
DR GO; GO:0016567; P:protein ubiquitination; IDA:UniProtKB.
DR Gene3D; 3.30.40.10; -; 1.
DR InterPro; IPR001841; Znf_RING.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR Pfam; PF13639; zf-RING_2; 1.
DR SMART; SM00184; RING; 1.
DR PROSITE; PS50089; ZF_RING_2; 1.
PE 2: Evidence at transcript level;
KW Membrane; Metal-binding; Reference proteome; Transferase; Transmembrane;
KW Transmembrane helix; Ubl conjugation pathway; Zinc; Zinc-finger.
FT CHAIN 1..353
FT /note="E3 ubiquitin-protein ligase Os03g0188200"
FT /id="PRO_0000397686"
FT TRANSMEM 48..68
FT /note="Helical"
FT /evidence="ECO:0000255"
FT ZN_FING 133..175
FT /note="RING-type; atypical"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00175"
FT REGION 308..353
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 353 AA; 38124 MW; 7085E1C061F60C8F CRC64;
MAHRRIALAV LVTLLLSAFR PCLAQQSNDD TSKHHRSATA GGFTPTTVVV LVALITAFVL
LTVFSVLINR CAQARAPPRR AFRSTASHQP VGGAAAASRA SRGLDKEVVE AFPTAVYGDV
KARMAAKSGP LECAVCLAEF ADSDELRVLP ACCHVFHPDC IDPWLAAAVT CPLCRANLTA
PPVSLAAAES SDLTAPEEAV QEEESEELDE ASLMATFTPE SVIDFGATHD HEFDRAGYPH
YRRTQSAMDA APDRHTLRLP EHVMKELAAD RRHRRAASLA GYPDSVERTP RWLTSLWRSV
SWQRQSRADW DAGEEHGGSK RVHPVAGAQD ETPSGSGSDG SKENSDSDAL NRV
