PSBS1_ORYSJ
ID PSBS1_ORYSJ Reviewed; 268 AA.
AC Q943K1;
DT 03-JUL-2019, integrated into UniProtKB/Swiss-Prot.
DT 01-DEC-2001, sequence version 1.
DT 03-AUG-2022, entry version 134.
DE RecName: Full=Photosystem II 22 kDa protein 1, chloroplastic {ECO:0000305};
DE Short=22 kDa protein of photosystem II 1 {ECO:0000305};
DE AltName: Full=Photosystem II subunit 1 {ECO:0000303|PubMed:17459330, ECO:0000303|PubMed:21804028, ECO:0000303|PubMed:21873330};
DE Short=OsPsbS1 {ECO:0000303|PubMed:17459330, ECO:0000303|PubMed:21804028, ECO:0000303|PubMed:21873330};
DE Flags: Precursor;
GN Name=PSBS1 {ECO:0000303|PubMed:17459330, ECO:0000303|PubMed:21804028,
GN ECO:0000303|PubMed:21873330};
GN Synonyms=qNPQ1-2 {ECO:0000303|PubMed:21804028};
GN OrderedLocusNames=Os01g0869800 {ECO:0000312|EMBL:BAF06843.1},
GN LOC_Os01g64960 {ECO:0000305};
GN ORFNames=OsJ_04227 {ECO:0000312|EMBL:EAZ14301.1},
GN OSNPB_010869800 {ECO:0000312|EMBL:BAS75428.1},
GN P0039A07.6 {ECO:0000312|EMBL:BAB64099.1},
GN P0677H08.38 {ECO:0000312|EMBL:BAB89811.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP FUNCTION, AND DISRUPTION PHENOTYPE.
RX PubMed=17459330; DOI=10.1016/j.bbabio.2007.02.021;
RA Zulfugarov I.S., Ham O.-K., Mishra S.R., Kim J.-Y., Nath K., Koo H.-Y.,
RA Kim H.-S., Moon Y.-H., An G., Lee C.-H.;
RT "Dependence of reaction center-type energy-dependent quenching on
RT photosystem II antenna size.";
RL Biochim. Biophys. Acta 1767:773-780(2007).
RN [8]
RP REVIEW.
RX PubMed=21512324; DOI=10.4161/psb.5.12.13410;
RA Umate P.;
RT "Genome-wide analysis of the family of light-harvesting chlorophyll a/b-
RT binding proteins in Arabidopsis and rice.";
RL Plant Signal. Behav. 5:1537-1542(2010).
RN [9]
RP FUNCTION, AND DISRUPTION PHENOTYPE.
RC STRAIN=cv. Nipponbare;
RX PubMed=21873330; DOI=10.1093/pcp/pcr119;
RA Ishida S., Morita K., Kishine M., Takabayashi A., Murakami R., Takeda S.,
RA Shimamoto K., Sato F., Endo T.;
RT "Allocation of absorbed light energy in PSII to thermal dissipations in the
RT presence or absence of PsbS subunits of rice.";
RL Plant Cell Physiol. 52:1822-1831(2011).
RN [10]
RP FUNCTION, DISRUPTION PHENOTYPE, TISSUE SPECIFICITY, GENE FAMILY, AND
RP NOMENCLATURE.
RC STRAIN=cv. Sasanishiki;
RX PubMed=21804028; DOI=10.1073/pnas.1104809108;
RA Kasajima I., Ebana K., Yamamoto T., Takahara K., Yano M., Kawai-Yamada M.,
RA Uchimiya H.;
RT "Molecular distinction in genetic regulation of nonphotochemical quenching
RT in rice.";
RL Proc. Natl. Acad. Sci. U.S.A. 108:13835-13840(2011).
RN [11]
RP FUNCTION, AND DISRUPTION PHENOTYPE.
RX PubMed=22413771; DOI=10.1111/j.1365-313x.2012.04995.x;
RA Hubbart S., Ajigboye O.O., Horton P., Murchie E.H.;
RT "The photoprotective protein PsbS exerts control over CO(2) assimilation
RT rate in fluctuating light in rice.";
RL Plant J. 71:402-412(2012).
RN [12]
RP FUNCTION, AND DISRUPTION PHENOTYPE.
RX PubMed=25342550; DOI=10.1186/s12870-014-0242-2;
RA Zulfugarov I.S., Tovuu A., Eu Y.-J., Dogsom B., Poudyal R.S., Nath K.,
RA Hall M., Banerjee M., Yoon U.C., Moon Y.-H., An G., Jansson S., Lee C.-H.;
RT "Production of superoxide from Photosystem II in a rice (Oryza sativa L.)
RT mutant lacking PsbS.";
RL BMC Plant Biol. 14:242-242(2014).
RN [13]
RP FUNCTION, AND DISRUPTION PHENOTYPE.
RC STRAIN=cv. Nipponbare;
RX PubMed=24850835; DOI=10.1093/pcp/pcu069;
RA Ikeuchi M., Uebayashi N., Sato F., Endo T.;
RT "Physiological functions of PsbS-dependent and PsbS-independent NPQ under
RT naturally fluctuating light conditions.";
RL Plant Cell Physiol. 55:1286-1295(2014).
RN [14]
RP REVIEW.
RX PubMed=24726274; DOI=10.1016/j.plaphy.2014.03.018;
RA Endo T., Uebayashi N., Ishida S., Ikeuchi M., Sato F.;
RT "Light energy allocation at PSII under field light conditions: how much
RT energy is lost in NPQ-associated dissipation?";
RL Plant Physiol. Biochem. 81:115-120(2014).
RN [15]
RP FUNCTION, AND DISRUPTION PHENOTYPE.
RX PubMed=25306526; DOI=10.1016/j.plaphy.2014.10.001;
RA Zulfugarov I.S., Tovuu A., Lee C.-H.;
RT "Acceleration of cyclic electron flow in rice plants (Oryza sativa L.)
RT deficient in the PsbS protein of Photosystem II.";
RL Plant Physiol. Biochem. 84:233-239(2014).
RN [16]
RP INDUCTION BY LIGHT, AND MISCELLANEOUS.
RC STRAIN=cv. Sasanishiki;
RX PubMed=25259844; DOI=10.1371/journal.pone.0102742;
RA Nuruzzaman M., Kanno T., Amada R., Habu Y., Kasajima I., Ishikawa T.,
RA Kawai-Yamada M., Uchimiya H.;
RT "Does the upstream region possessing MULE-like sequence in rice upregulate
RT PsbS1 gene expression?";
RL PLoS ONE 9:E102742-E102742(2014).
CC -!- FUNCTION: Involved in high light-mediated energy-dependent
CC nonphotochemical quenching (NPQ, qE) and thermal dissipation (TD) thus
CC regulating energy conversion in photosystem II and protecting from
CC photoinhibition (PubMed:17459330, PubMed:21804028, PubMed:21873330,
CC PubMed:22413771, PubMed:25342550, PubMed:24850835, PubMed:25306526).
CC Seems also to regulate quantum yield of electron transport in
CC fluctuating light conditions (PubMed:24850835).
CC {ECO:0000269|PubMed:17459330, ECO:0000269|PubMed:21804028,
CC ECO:0000269|PubMed:21873330, ECO:0000269|PubMed:22413771,
CC ECO:0000269|PubMed:24850835, ECO:0000269|PubMed:25306526,
CC ECO:0000269|PubMed:25342550}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast thylakoid membrane
CC {ECO:0000250|UniProtKB:Q9XF91}; Multi-pass membrane protein
CC {ECO:0000255}.
CC -!- TISSUE SPECIFICITY: Expressed in leaves (at protein level).
CC {ECO:0000269|PubMed:21804028}.
CC -!- INDUCTION: By high light. {ECO:0000269|PubMed:25259844}.
CC -!- DISRUPTION PHENOTYPE: Impaired energy-dependent nonphotochemical
CC quenching (NPQ, qE) in high light conditions leading to an increased
CC susceptibility to photoinhibition (PubMed:17459330, PubMed:21804028,
CC PubMed:22413771, PubMed:25342550). Reduced seeds production
CC (PubMed:21804028). Reduced photosynthetic CO(2) assimilation in high
CC light intensity (PubMed:22413771). Accumulation of superoxide and
CC hydrogen peroxide in chloroplasts (PubMed:25342550). Accelerated cyclic
CC electron flow (CEF) due to an alternate PGR5-dependent CEF pathway
CC confering a photoprotection of photosystems in the absence of energy-
CC dependent quenching (qE) (PubMed:25306526). Plants missing both PSBS1
CC and PSBS2 exhibit a decreased light-inducible portion of thermal
CC dissipation (TD), including energy quenching (qE)-associated TD (qE-TD)
CC (PubMed:21873330, PubMed:24850835). Plants missing both PSBS1 and PSBS2
CC have a higher quantum yield of electron transport upon the transition
CC from high light to low light, but a lower quantum yield of electron
CC transport II upon the transition from low light to high light
CC (PubMed:24850835). {ECO:0000269|PubMed:17459330,
CC ECO:0000269|PubMed:21804028, ECO:0000269|PubMed:21873330,
CC ECO:0000269|PubMed:22413771, ECO:0000269|PubMed:24850835,
CC ECO:0000269|PubMed:25306526, ECO:0000269|PubMed:25342550}.
CC -!- MISCELLANEOUS: A Mutator-like-element (MULE) is present in the promoter
CC of japonica type cultivars but not in indica type cultivars; this leads
CC to an accumulation in response to high light.
CC {ECO:0000269|PubMed:25259844}.
CC -!- SIMILARITY: Belongs to the ELIP/psbS family. {ECO:0000305}.
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DR EMBL; AP003235; BAB64099.1; -; Genomic_DNA.
DR EMBL; AP003286; BAB89811.1; -; Genomic_DNA.
DR EMBL; AP008207; BAF06843.1; -; Genomic_DNA.
DR EMBL; AP014957; BAS75428.1; -; Genomic_DNA.
DR EMBL; CM000138; EAZ14301.1; -; Genomic_DNA.
DR EMBL; AK058284; BAG86646.1; -; mRNA.
DR EMBL; AK071827; BAG92715.1; -; mRNA.
DR EMBL; AK104275; BAG96563.1; -; mRNA.
DR RefSeq; XP_015621169.1; XM_015765683.1.
DR AlphaFoldDB; Q943K1; -.
DR SMR; Q943K1; -.
DR STRING; 4530.OS01T0869800-01; -.
DR PaxDb; Q943K1; -.
DR PRIDE; Q943K1; -.
DR EnsemblPlants; Os01t0869800-01; Os01t0869800-01; Os01g0869800.
DR GeneID; 4324933; -.
DR Gramene; Os01t0869800-01; Os01t0869800-01; Os01g0869800.
DR KEGG; osa:4324933; -.
DR eggNOG; ENOG502QTMT; Eukaryota.
DR HOGENOM; CLU_090803_0_0_1; -.
DR InParanoid; Q943K1; -.
DR OMA; KPASHLF; -.
DR OrthoDB; 1327341at2759; -.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000007752; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 1.
DR GO; GO:0009535; C:chloroplast thylakoid membrane; IBA:GO_Central.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0009523; C:photosystem II; IEA:UniProtKB-KW.
DR GO; GO:0010196; P:nonphotochemical quenching; IMP:UniProtKB.
DR GO; GO:0015979; P:photosynthesis; IEA:UniProtKB-KW.
DR GO; GO:0009644; P:response to high light intensity; IDA:UniProtKB.
DR InterPro; IPR022796; Chloroa_b-bind.
DR Pfam; PF00504; Chloroa_b-bind; 1.
PE 1: Evidence at protein level;
KW Chloroplast; Membrane; Photosynthesis; Photosystem II; Plastid;
KW Reference proteome; Repeat; Thylakoid; Transit peptide; Transmembrane;
KW Transmembrane helix.
FT TRANSIT 1..60
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 61..268
FT /note="Photosystem II 22 kDa protein 1, chloroplastic"
FT /id="PRO_0000447492"
FT TRANSMEM 99..119
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 133..153
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 199..219
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 234..254
FT /note="Helical"
FT /evidence="ECO:0000255"
FT REPEAT 54..161
FT /note="1"
FT /evidence="ECO:0000250|UniProtKB:Q0J8R9"
FT REPEAT 164..268
FT /note="2"
FT /evidence="ECO:0000250|UniProtKB:Q0J8R9"
SQ SEQUENCE 268 AA; 27903 MW; 00BCD34843E83EC7 CRC64;
MAQSMLVSGA NGTVAAASTS RLQPVRPTPF SRLVLSQPSS SLGRAVSVKT VALFGRSKTK
AAPARKAEPK PKFKTEDGIF GTSGGIGFTK ENELFVGRVA MLGFAASILG EAITGKGILA
QLNLETGIPI YEAEPLLLFF ILFTLLGAIG ALGDRGSFVD DQPVTGLDKA VIAPGKGFRS
ALGLSEGGPL FGFTKANELF VGRLAQLGIA FSIIGEIITG KGALAQLNIE TGVPINEIEP
LVLFNVVFFF IAAINPGTGK FVSDDDEE
