ATL62_ARATH
ID ATL62_ARATH Reviewed; 141 AA.
AC Q9LJL6; Q4FE36;
DT 05-JUL-2005, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 127.
DE RecName: Full=Putative RING-H2 finger protein ATL62;
DE EC=2.3.2.27 {ECO:0000305};
DE AltName: Full=RING-type E3 ubiquitin transferase ATL62 {ECO:0000305};
GN Name=ATL62; OrderedLocusNames=At3g19140; ORFNames=MVI11.4;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=cv. Columbia; TISSUE=Leaf;
RX PubMed=15644464; DOI=10.1104/pp.104.052423;
RA Stone S.L., Hauksdottir H., Troy A., Herschleb J., Kraft E., Callis J.;
RT "Functional analysis of the RING-type ubiquitin ligase family of
RT Arabidopsis.";
RL Plant Physiol. 137:13-30(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10907853; DOI=10.1093/dnares/7.3.217;
RA Kaneko T., Katoh T., Sato S., Nakamura Y., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. II. Sequence
RT features of the 4,251,695 bp regions covered by 90 P1, TAC and BAC
RT clones.";
RL DNA Res. 7:217-221(2000).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP GENE FAMILY ORGANIZATION.
RX PubMed=11983057; DOI=10.1186/gb-2002-3-4-research0016;
RA Kosarev P., Mayer K.F.X., Hardtke C.S.;
RT "Evaluation and classification of RING-finger domains encoded by the
RT Arabidopsis genome.";
RL Genome Biol. 3:RESEARCH0016.1-RESEARCH0016.12(2002).
RN [5]
RP NOMENCLATURE, AND GENE FAMILY ORGANIZATION.
RX PubMed=16557337; DOI=10.1007/s00239-005-0038-y;
RA Serrano M., Parra S., Alcaraz L.D., Guzman P.;
RT "The ATL gene family from Arabidopsis thaliana and Oryza sativa comprises a
RT large number of putative ubiquitin ligases of the RING-H2 type.";
RL J. Mol. Evol. 62:434-445(2006).
CC -!- CATALYTIC ACTIVITY:
CC Reaction=S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine +
CC [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-
CC cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.;
CC EC=2.3.2.27; Evidence={ECO:0000305};
CC -!- PATHWAY: Protein modification; protein ubiquitination.
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000305}; Single-pass membrane
CC protein {ECO:0000305}.
CC -!- DOMAIN: The RING-type zinc finger domain mediates binding to an E2
CC ubiquitin-conjugating enzyme. {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the RING-type zinc finger family. ATL subfamily.
CC {ECO:0000305}.
CC -!- CAUTION: Lacks one cysteine (here Phe-106), present in the RING domain,
CC which is one of the conserved features of the RING-type zinc finger
CC family. {ECO:0000305}.
CC -!- CAUTION: Could be the product of a pseudogene. {ECO:0000305}.
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DR EMBL; DQ086855; AAZ14059.1; -; Genomic_DNA.
DR EMBL; AP000419; BAB02954.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE76197.1; -; Genomic_DNA.
DR RefSeq; NP_188545.1; NM_112801.1.
DR AlphaFoldDB; Q9LJL6; -.
DR SMR; Q9LJL6; -.
DR BioGRID; 6781; 1.
DR STRING; 3702.AT3G19140.1; -.
DR PaxDb; Q9LJL6; -.
DR PRIDE; Q9LJL6; -.
DR EnsemblPlants; AT3G19140.1; AT3G19140.1; AT3G19140.
DR GeneID; 821448; -.
DR Gramene; AT3G19140.1; AT3G19140.1; AT3G19140.
DR KEGG; ath:AT3G19140; -.
DR Araport; AT3G19140; -.
DR TAIR; locus:2094108; AT3G19140.
DR eggNOG; KOG0800; Eukaryota.
DR HOGENOM; CLU_152165_0_0_1; -.
DR InParanoid; Q9LJL6; -.
DR OMA; TIFMWIM; -.
DR OrthoDB; 1817256at2759; -.
DR PhylomeDB; Q9LJL6; -.
DR UniPathway; UPA00143; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LJL6; baseline and differential.
DR Genevisible; Q9LJL6; AT.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0005886; C:plasma membrane; IDA:TAIR.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0004842; F:ubiquitin-protein transferase activity; IDA:TAIR.
DR GO; GO:0048577; P:negative regulation of short-day photoperiodism, flowering; IMP:TAIR.
DR GO; GO:0016567; P:protein ubiquitination; IBA:GO_Central.
DR Gene3D; 3.30.40.10; -; 1.
DR InterPro; IPR044675; RING1-like.
DR InterPro; IPR001841; Znf_RING.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR45676; PTHR45676; 1.
DR Pfam; PF13639; zf-RING_2; 1.
DR PROSITE; PS50089; ZF_RING_2; 1.
PE 5: Uncertain;
KW Membrane; Metal-binding; Reference proteome; Transferase; Transmembrane;
KW Transmembrane helix; Ubl conjugation pathway; Zinc; Zinc-finger.
FT CHAIN 1..141
FT /note="Putative RING-H2 finger protein ATL62"
FT /id="PRO_0000055793"
FT TRANSMEM 14..32
FT /note="Helical"
FT /evidence="ECO:0000255"
FT ZN_FING 79..121
FT /note="RING-type; degenerate"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00175"
SQ SEQUENCE 141 AA; 15950 MW; E874805526B062BE CRC64;
MNEDALEAVR SRTFFAILTV FYSIFRCCLA YCNKGDDDHL IHPSHSLHVI KATGINPSVL
LSIPVVSFNA NAFKDNIECV VCLSKFIDED KARVLPSCNH CFHFDFTDTW LHSDYTCPNC
RKNVEEIQNH ELSLSPNPNS G
