PSMDA_ORYSJ
ID PSMDA_ORYSJ Reviewed; 402 AA.
AC O82143;
DT 10-OCT-2018, integrated into UniProtKB/Swiss-Prot.
DT 01-NOV-1998, sequence version 1.
DT 03-AUG-2022, entry version 141.
DE RecName: Full=26S proteasome non-ATPase regulatory subunit 4 homolog {ECO:0000305};
DE AltName: Full=26S proteasome regulatory subunit RPN10 {ECO:0000303|PubMed:11874462};
DE Short=OsRPN10 {ECO:0000303|PubMed:11874462};
DE AltName: Full=26S proteasome regulatory subunit S5a homolog {ECO:0000303|Ref.1};
DE Short=OsS5a {ECO:0000303|Ref.1};
GN Name=RPN10 {ECO:0000303|PubMed:11874462};
GN OrderedLocusNames=Os03g0243300 {ECO:0000312|EMBL:BAF11441.1},
GN LOC_Os03g13970 {ECO:0000312|EMBL:ABF94915.1};
GN ORFNames=OsJ_10104 {ECO:0000312|EMBL:EEE58678.1},
GN OSNPB_030243300 {ECO:0000312|EMBL:BAS83212.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Nipponbare; TISSUE=Seedling;
RX DOI=10.5511/plantbiotechnology.15.147;
RA Yanagawa Y., Ueda T., Yamamoto K., Sasaki T., Tanaka K., Hashimoto J.,
RA Sato T., Nakagawa H.;
RT "Cloning and sequencing of cDNA from Oryza sativa encoding a homolog to
RT non-ATPase subunit, MBP1, of 26S proteasome in Arabidopsis thaliana.";
RL Plant Biotechnol. 15:147-150(1998).
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA], IDENTIFICATION BY MASS SPECTROMETRY, AND
RP SUBUNIT.
RC STRAIN=cv. Nipponbare;
RX PubMed=11874462; DOI=10.1046/j.1432-1033.2002.02792.x;
RA Shibahara T., Kawasaki H., Hirano H.;
RT "Identification of the 19S regulatory particle subunits from the rice 26S
RT proteasome.";
RL Eur. J. Biochem. 269:1474-1483(2002).
RN [3]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Ilpoombyeo; TISSUE=Immature seed;
RA Yoon U.H.;
RT "Structural and expression analysis of immature seed genes in Oryza sativa
RT L.";
RL Submitted (OCT-2012) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [6]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [7]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [8]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [9]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [10]
RP INTERACTION WITH PI4KG4.
RX PubMed=28254780; DOI=10.1105/tpc.16.00728;
RA Song S., Chen Y., Liu L., Wang Y., Bao S., Zhou X., Teo Z.W., Mao C.,
RA Gan Y., Yu H.;
RT "OsFTIP1-mediated regulation of florigen transport in rice is negatively
RT regulated by the ubiquitin-like domain kinase OsUbDKgamma4.";
RL Plant Cell 29:491-507(2017).
CC -!- FUNCTION: Plays a role in maintaining the structural integrity of the
CC 19S regulatory particle (RP), subcomplex of the 26S proteasome. Plays a
CC major role in both the direct and indirect recognition of ubiquitinated
CC substrates of ubiquitin/26S proteasome-mediated proteolysis (UPP).
CC Binds and presumably selects ubiquitin-conjugates for destruction.
CC {ECO:0000250|UniProtKB:P55034}.
CC -!- SUBUNIT: Component of the 19S regulatory particle (RP/PA700) base
CC subcomplex of the 26S proteasome. The 26S proteasome is composed of a
CC core protease (CP), known as the 20S proteasome, capped at one or both
CC ends by the 19S regulatory particle (RP/PA700). The RP/PA700 complex is
CC composed of at least 17 different subunits in two subcomplexes, the
CC base and the lid, which form the portions proximal and distal to the
CC 20S proteolytic core, respectively (PubMed:11874462). Interacts with
CC PI4KG4 (PubMed:28254780). {ECO:0000269|PubMed:11874462,
CC ECO:0000269|PubMed:28254780}.
CC -!- SIMILARITY: Belongs to the proteasome subunit S5A family.
CC {ECO:0000305}.
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DR EMBL; AB010740; BAA32704.1; -; mRNA.
DR EMBL; AB037151; BAB78488.1; -; mRNA.
DR EMBL; JX972162; AGT38456.1; -; mRNA.
DR EMBL; DP000009; ABF94915.1; -; Genomic_DNA.
DR EMBL; DP000009; ABF94916.1; -; Genomic_DNA.
DR EMBL; AP008209; BAF11441.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS83212.1; -; Genomic_DNA.
DR EMBL; CM000140; EEE58678.1; -; Genomic_DNA.
DR EMBL; AK073601; BAG93544.1; -; mRNA.
DR PIR; T51606; T51606.
DR RefSeq; XP_015632315.1; XM_015776829.1.
DR AlphaFoldDB; O82143; -.
DR SMR; O82143; -.
DR STRING; 4530.OS03T0243300-01; -.
DR iPTMnet; O82143; -.
DR PaxDb; O82143; -.
DR PRIDE; O82143; -.
DR EnsemblPlants; Os03t0243300-01; Os03t0243300-01; Os03g0243300.
DR GeneID; 4332222; -.
DR Gramene; Os03t0243300-01; Os03t0243300-01; Os03g0243300.
DR KEGG; osa:4332222; -.
DR eggNOG; KOG2884; Eukaryota.
DR HOGENOM; CLU_033293_0_0_1; -.
DR InParanoid; O82143; -.
DR OMA; RIVIFVC; -.
DR OrthoDB; 1244685at2759; -.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000007752; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR GO; GO:0005829; C:cytosol; IBA:GO_Central.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0008540; C:proteasome regulatory particle, base subcomplex; IDA:UniProtKB.
DR GO; GO:0031593; F:polyubiquitin modification-dependent protein binding; IBA:GO_Central.
DR GO; GO:0043161; P:proteasome-mediated ubiquitin-dependent protein catabolic process; IBA:GO_Central.
DR Gene3D; 3.40.50.410; -; 1.
DR InterPro; IPR003903; UIM_dom.
DR InterPro; IPR002035; VWF_A.
DR InterPro; IPR036465; vWFA_dom_sf.
DR Pfam; PF02809; UIM; 3.
DR Pfam; PF13519; VWA_2; 1.
DR SMART; SM00726; UIM; 3.
DR SMART; SM00327; VWA; 1.
DR SUPFAM; SSF53300; SSF53300; 1.
DR PROSITE; PS50330; UIM; 3.
DR PROSITE; PS50234; VWFA; 1.
PE 1: Evidence at protein level;
KW Proteasome; Reference proteome; Repeat.
FT CHAIN 1..402
FT /note="26S proteasome non-ATPase regulatory subunit 4
FT homolog"
FT /id="PRO_0000445343"
FT DOMAIN 5..189
FT /note="VWFA"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00219"
FT DOMAIN 221..240
FT /note="UIM 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00213"
FT DOMAIN 291..310
FT /note="UIM 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00213"
FT DOMAIN 323..342
FT /note="UIM 3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00213"
FT REGION 241..292
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 302..321
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 363..402
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 241..257
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 277..292
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 382..402
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 402 AA; 42383 MW; 390E07904630F522 CRC64;
MVLEATMICI DNSEWMRNGD YSPSRFQAQA DAVNLICGAK TQSNPENTVG VMTMAGKGVR
VLVTPTSDLG KILACMHGLE VGAEANLAAA IQVAQLALKH RQNKRQQQRI IAFIGSPVKY
DKKVLETIGK KLKKNNVALD IVDFGETDDD KPEKLEALIS AVNSSDSSHI VHVPPGENAL
SDVLISTPIF TGEEGGSGFA ASAAAAAATG AAGFEFDVDP NVDPELALAL RLSMEEERAR
QEAIAKKAAE ESSGAENKDH ASSSNADSVM AEAEPASNAA DDKKDQPKED DDAQLLQQAL
AMSMEEGSSG AAAADAAMAE AAVDDQDLAL ALQMSVQDAG GSSQSDMSKV FEDRSFVTSI
LNSLPGVDPN DPSVKDLLAS LHGQGEQEKK EDKSDKPEDE KK
