PSRP6_ARATH
ID PSRP6_ARATH Reviewed; 106 AA.
AC Q9FKP0;
DT 19-SEP-2006, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 03-AUG-2022, entry version 93.
DE RecName: Full=50S ribosomal protein 6, chloroplastic;
DE AltName: Full=CL25;
DE AltName: Full=Plastid-specific 50S ribosomal protein 6;
DE Short=PSRP-6;
DE Flags: Precursor;
GN Name=PSRP6; OrderedLocusNames=At5g17870; ORFNames=MPI7_10;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9679202; DOI=10.1093/dnares/5.2.131;
RA Kaneko T., Kotani H., Nakamura Y., Sato S., Asamizu E., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. V. Sequence
RT features of the regions of 1,381,565 bp covered by twenty one physically
RT assigned P1 and TAC clones.";
RL DNA Res. 5:131-145(1998).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBUNIT: Part of the 50S ribosomal subunit. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast.
CC -!- SIMILARITY: Belongs to the chloroplast-specific ribosomal protein cL38
CC family. {ECO:0000305}.
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DR EMBL; AB011480; BAB11220.1; -; Genomic_DNA.
DR EMBL; CP002688; AED92480.1; -; Genomic_DNA.
DR EMBL; AY039549; AAK62604.1; -; mRNA.
DR EMBL; AY093759; AAM10383.1; -; mRNA.
DR EMBL; AY086669; AAM63726.1; -; mRNA.
DR RefSeq; NP_568358.1; NM_121793.3.
DR AlphaFoldDB; Q9FKP0; -.
DR SMR; Q9FKP0; -.
DR STRING; 3702.AT5G17870.1; -.
DR PaxDb; Q9FKP0; -.
DR PRIDE; Q9FKP0; -.
DR ProteomicsDB; 249372; -.
DR EnsemblPlants; AT5G17870.1; AT5G17870.1; AT5G17870.
DR GeneID; 831655; -.
DR Gramene; AT5G17870.1; AT5G17870.1; AT5G17870.
DR KEGG; ath:AT5G17870; -.
DR Araport; AT5G17870; -.
DR TAIR; locus:2170328; AT5G17870.
DR eggNOG; ENOG502S6UG; Eukaryota.
DR HOGENOM; CLU_164335_0_0_1; -.
DR InParanoid; Q9FKP0; -.
DR PhylomeDB; Q9FKP0; -.
DR PRO; PR:Q9FKP0; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FKP0; baseline and differential.
DR Genevisible; Q9FKP0; AT.
DR GO; GO:0009507; C:chloroplast; IDA:TAIR.
DR GO; GO:0009536; C:plastid; HDA:TAIR.
DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR GO; GO:0019843; F:rRNA binding; IEA:InterPro.
DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR GO; GO:0006412; P:translation; IEA:InterPro.
DR InterPro; IPR020526; Ribosomal_L6_chp.
DR PANTHER; PTHR36798; PTHR36798; 1.
DR Pfam; PF17257; DUF5323; 1.
PE 3: Inferred from homology;
KW Chloroplast; Plastid; Reference proteome; Ribonucleoprotein;
KW Ribosomal protein; Transit peptide.
FT TRANSIT 1..39
FT /note="Chloroplast"
FT /evidence="ECO:0000250"
FT CHAIN 40..106
FT /note="50S ribosomal protein 6, chloroplastic"
FT /id="PRO_0000249864"
FT REGION 42..70
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 47..61
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 106 AA; 11037 MW; 7F276E469B09E0B8 CRC64;
MSVSAIFGTG IVTVAASPVL RQFQVPKLGN GGGLGMVIEC SSRPQKKSTA HHRKTRPKKT
QPWDIKRKPT VYAPLPPLPA EWSPFTLASD DGGAATAAGD LVSGAA