PSRP6_SPIOL
ID PSRP6_SPIOL Reviewed; 116 AA.
AC P82411; A0A0K9RCH6;
DT 19-SEP-2006, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2000, sequence version 1.
DT 25-MAY-2022, entry version 53.
DE RecName: Full=50S ribosomal protein 6, chloroplastic {ECO:0000305};
DE AltName: Full=CL25;
DE AltName: Full=Chloroplastic large ribosomal subunit protein cL38 {ECO:0000303|PubMed:28007896};
DE AltName: Full=Plastid-specific 50S ribosomal protein 6 {ECO:0000303|PubMed:10874046};
DE Short=PSRP-6;
DE Flags: Precursor;
GN Name=PSRP6; ORFNames=SOVF_082300;
OS Spinacia oleracea (Spinach).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia.
OX NCBI_TaxID=3562;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], PROTEIN SEQUENCE OF 48-64, SUBUNIT, AND
RP SUBCELLULAR LOCATION.
RC STRAIN=cv. Alwaro; TISSUE=Leaf;
RX PubMed=10874046; DOI=10.1074/jbc.m005012200;
RA Yamaguchi K., Subramanian A.R.;
RT "The plastid ribosomal proteins. Identification of all the proteins in the
RT 50S subunit of an organelle ribosome (chloroplast).";
RL J. Biol. Chem. 275:28466-28482(2000).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Viroflay; TISSUE=Leaf;
RX PubMed=24352233; DOI=10.1038/nature12817;
RA Dohm J.C., Minoche A.E., Holtgraewe D., Capella-Gutierrez S.,
RA Zakrzewski F., Tafer H., Rupp O., Soerensen T.R., Stracke R., Reinhardt R.,
RA Goesmann A., Kraft T., Schulz B., Stadler P.F., Schmidt T., Gabaldon T.,
RA Lehrach H., Weisshaar B., Himmelbauer H.;
RT "The genome of the recently domesticated crop plant sugar beet (Beta
RT vulgaris).";
RL Nature 505:546-549(2014).
RN [3]
RP STRUCTURE BY ELECTRON MICROSCOPY (3.50 ANGSTROMS).
RX PubMed=27762343; DOI=10.1038/srep35793;
RA Ahmed T., Yin Z., Bhushan S.;
RT "Cryo-EM structure of the large subunit of the spinach chloroplast
RT ribosome.";
RL Sci. Rep. 6:35793-35793(2016).
RN [4]
RP STRUCTURE BY ELECTRON MICROSCOPY (3.25 ANGSTROMS), SUBUNIT, AND SUBCELLULAR
RP LOCATION.
RX PubMed=28007896; DOI=10.15252/embj.201695959;
RA Bieri P., Leibundgut M., Saurer M., Boehringer D., Ban N.;
RT "The complete structure of the chloroplast 70S ribosome in complex with
RT translation factor pY.";
RL EMBO J. 36:475-486(2017).
CC -!- FUNCTION: Component of the chloroplast ribosome (chloro-ribosome), a
CC dedicated translation machinery responsible for the synthesis of
CC chloroplast genome-encoded proteins, including proteins of the
CC transcription and translation machinery and components of the
CC photosynthetic apparatus. {ECO:0000305|PubMed:10874046,
CC ECO:0000305|PubMed:28007896}.
CC -!- SUBUNIT: Component of the chloroplast large ribosomal subunit (LSU).
CC Mature 70S chloroplast ribosomes of higher plants consist of a small
CC (30S) and a large (50S) subunit. The 30S small subunit contains 1
CC molecule of ribosomal RNA (16S rRNA) and 24 different proteins. The 50S
CC large subunit contains 3 rRNA molecules (23S, 5S and 4.5S rRNA) and 33
CC different proteins. {ECO:0000269|PubMed:10874046,
CC ECO:0000269|PubMed:28007896}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast
CC {ECO:0000269|PubMed:10874046, ECO:0000269|PubMed:28007896}.
CC -!- SIMILARITY: Belongs to the chloroplast-specific ribosomal protein cL38
CC family. {ECO:0000305}.
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DR EMBL; AF245292; AAF64189.1; -; mRNA.
DR EMBL; KQ144465; KNA17188.1; -; Genomic_DNA.
DR PDB; 5H1S; EM; 3.50 A; h=1-116.
DR PDB; 5MLC; EM; 3.90 A; 8=1-116.
DR PDB; 5MMI; EM; 3.25 A; 7=1-116.
DR PDB; 5MMM; EM; 3.40 A; 7=1-116.
DR PDB; 5X8P; EM; 3.40 A; 7=1-116.
DR PDB; 5X8T; EM; 3.30 A; 7=1-116.
DR PDB; 6ERI; EM; 3.00 A; Af=48-94.
DR PDBsum; 5H1S; -.
DR PDBsum; 5MLC; -.
DR PDBsum; 5MMI; -.
DR PDBsum; 5MMM; -.
DR PDBsum; 5X8P; -.
DR PDBsum; 5X8T; -.
DR PDBsum; 6ERI; -.
DR AlphaFoldDB; P82411; -.
DR SMR; P82411; -.
DR IntAct; P82411; 1.
DR STRING; 3562.P82411; -.
DR OrthoDB; 1636923at2759; -.
DR Proteomes; UP000054095; Unassembled WGS sequence.
DR GO; GO:0009507; C:chloroplast; IBA:GO_Central.
DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW.
DR GO; GO:0019843; F:rRNA binding; IEA:InterPro.
DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR GO; GO:0006412; P:translation; IEA:InterPro.
DR InterPro; IPR020526; Ribosomal_L6_chp.
DR PANTHER; PTHR36798; PTHR36798; 1.
DR Pfam; PF17257; DUF5323; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Chloroplast; Direct protein sequencing; Plastid;
KW Reference proteome; Ribonucleoprotein; Ribosomal protein; RNA-binding;
KW Transit peptide.
FT TRANSIT 1..47
FT /note="Chloroplast"
FT /evidence="ECO:0000269|PubMed:10874046"
FT CHAIN 48..116
FT /note="50S ribosomal protein 6, chloroplastic"
FT /id="PRO_0000249865"
FT REGION 95..116
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT HELIX 56..62
FT /evidence="ECO:0007829|PDB:5MMI"
FT HELIX 69..72
FT /evidence="ECO:0007829|PDB:5MMI"
FT STRAND 88..92
FT /evidence="ECO:0007829|PDB:5MMI"
SQ SEQUENCE 116 AA; 12065 MW; 02EF117AFEFC9340 CRC64;
MSVSAIFGAR VVTIPSVLRT SSVDGRTVKL QPSTGGSCGG GVITIECSSR PQKKGTAHHM
KTRPKKTARW DIKRGPAVYP PLPPLPAEWT IVSSAVDEAD SSSSTTSSSA EIAQSA
