PTC1_ORYSJ
ID PTC1_ORYSJ Reviewed; 679 AA.
AC Q67V61; A0A0N7KQW7; Q0J1D2;
DT 08-JUN-2016, integrated into UniProtKB/Swiss-Prot.
DT 11-OCT-2004, sequence version 1.
DT 25-MAY-2022, entry version 127.
DE RecName: Full=PHD finger protein PERSISTENT TAPETAL CELL 1 {ECO:0000303|PubMed:21515697};
GN Name=PTC1 {ECO:0000303|PubMed:21515697};
GN OrderedLocusNames=Os09g0449000 {ECO:0000312|EMBL:BAF25233.2},
GN LOC_Os09g27620 {ECO:0000305};
GN ORFNames=OsJ_29577 {ECO:0000312|EMBL:EAZ44935.1},
GN P0047B10.27 {ECO:0000312|EMBL:BAD37958.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, DEVELOPMENTAL STAGE, AND DISRUPTION
RP PHENOTYPE.
RX PubMed=21515697; DOI=10.1104/pp.111.175760;
RA Li H., Yuan Z., Vizcay-Barrena G., Yang C., Liang W., Zong J., Wilson Z.A.,
RA Zhang D.;
RT "PERSISTENT TAPETAL CELL1 encodes a PHD-finger protein that is required for
RT tapetal cell death and pollen development in rice.";
RL Plant Physiol. 156:615-630(2011).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
CC -!- FUNCTION: Probable transcriptional activator required for tapetal
CC programmed cell death (PCD) and degeneration, and pollen development in
CC anthers. {ECO:0000269|PubMed:21515697}.
CC -!- DEVELOPMENTAL STAGE: Expressed specifically in tapetal cells and
CC microspores during anther development in stages 8 and 9.
CC {ECO:0000269|PubMed:21515697}.
CC -!- DISRUPTION PHENOTYPE: Male sterility due to lack of tapetal programmed
CC cell death (PCD), delayed tapetal degeneration, abnormal pollen wall
CC formation and aborted microspore development.
CC {ECO:0000269|PubMed:21515697}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAT08370.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; GU597363; ADD91695.1; -; mRNA.
DR EMBL; AP005308; BAD37958.1; -; Genomic_DNA.
DR EMBL; AP008215; BAF25233.2; -; Genomic_DNA.
DR EMBL; AP014965; BAT08370.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CM000146; EAZ44935.1; -; Genomic_DNA.
DR RefSeq; XP_015611522.1; XM_015756036.1.
DR AlphaFoldDB; Q67V61; -.
DR SMR; Q67V61; -.
DR STRING; 4530.OS09T0449000-01; -.
DR PRIDE; Q67V61; -.
DR GeneID; 4347213; -.
DR KEGG; osa:4347213; -.
DR eggNOG; KOG1844; Eukaryota.
DR HOGENOM; CLU_2190757_0_0_1; -.
DR InParanoid; Q67V61; -.
DR OrthoDB; 347301at2759; -.
DR Proteomes; UP000000763; Chromosome 9.
DR Proteomes; UP000007752; Chromosome 9.
DR Proteomes; UP000059680; Chromosome 9.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0009555; P:pollen development; IMP:UniProtKB.
DR GO; GO:0043068; P:positive regulation of programmed cell death; IMP:UniProtKB.
DR Gene3D; 3.30.40.10; -; 1.
DR InterPro; IPR020549; YbeY_CS.
DR InterPro; IPR019786; Zinc_finger_PHD-type_CS.
DR InterPro; IPR011011; Znf_FYVE_PHD.
DR InterPro; IPR001965; Znf_PHD.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR SMART; SM00249; PHD; 1.
DR SUPFAM; SSF57903; SSF57903; 1.
DR PROSITE; PS01306; UPF0054; 1.
DR PROSITE; PS01359; ZF_PHD_1; 1.
PE 2: Evidence at transcript level;
KW Developmental protein; Metal-binding; Reference proteome; Transcription;
KW Transcription regulation; Zinc; Zinc-finger.
FT CHAIN 1..679
FT /note="PHD finger protein PERSISTENT TAPETAL CELL 1"
FT /id="PRO_0000436459"
FT ZN_FING 620..670
FT /note="PHD-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00146"
SQ SEQUENCE 679 AA; 73763 MW; 4B829D6A3FE4CDCB CRC64;
MAPKMVISLG SSRRRKRGEM LFRFEAFCQP GYPANFAGAG GFRDNVRTLL GFAHLEAGVH
GETKCWSFQL ELHRHPPTVV RLFVVEEEVA ASPHRQCHLC RHIGWGRHLI CSKRYHFLLP
RRESAAEADG LCFAINHGGG GGAEKASSKG TTTTASSRGH LLHGVVHLNG YGHLVALHGL
EGGSDFVSGH QIMDLWDRIC SALHVRTVSL VDTARKGHME LRLLHGVAYG ETWFGRWGYR
YGRPSYGVAL PSYRQSLHVL GSMPLCVLVP HLSCFSQELP MVVTKYQAIS GHKLLSLGDL
LRFMLELRAR LPATSVTAMD YRGIMSEASC RWSAKRVDMA ARAVVDALRR AEPAARWVTR
QEVRDAARAY IGDTGLLDFV LKSLGNHIVG NYVVRRTMNP VTKVLEYCLE DVSSVLPAVA
AGGGVPAQGK MRVRFQLTRA QLMRDLVHLY RHVLKEPSQA LTGGAFGAIP VAVRMVLDIK
HFVKDYHEGQ AAASSNGGGG FGHPHINLCC TLLVSNGSPE LAPPYETVTL PAHATVGELK
WEAQRVFSEM YLGLRSFAAD SVVGVGADQE GLPVLGLVDV GSAVVVQGSV GEQINGEDHE
RKEEAAAAAV CEGSGGGERV VDCACGAVDD DGERMACCDI CEAWQHTRCA GIADTEDAPH
VFLCSRCDND VVSFPSFNC
