ID   PTCD3_DANRE             Reviewed;         667 AA.
AC   Q32LU7; Q5BLA3;
DT   02-OCT-2007, integrated into UniProtKB/Swiss-Prot.
DT   06-DEC-2005, sequence version 1.
DT   03-AUG-2022, entry version 68.
DE   RecName: Full=Pentatricopeptide repeat domain-containing protein 3, mitochondrial;
DE   Flags: Precursor;
GN   Name=ptcd3; ORFNames=zgc:123014;
OS   Danio rerio (Zebrafish) (Brachydanio rerio).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Danionidae; Danioninae; Danio.
OX   NCBI_TaxID=7955;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=AB; TISSUE=Embryo, and Liver;
RG   NIH - Zebrafish Gene Collection (ZGC) project;
RL   Submitted (NOV-2005) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: Mitochondrial RNA-binding protein that may have a role in
CC       mitochondrial translation. {ECO:0000250}.
CC   -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000250}.
CC   -!- SIMILARITY: Belongs to the mitochondrion-specific ribosomal protein
CC       mS39 family. {ECO:0000305}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=AAH90536.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence.; Evidence={ECO:0000305};
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DR   EMBL; BC090536; AAH90536.1; ALT_SEQ; mRNA.
DR   EMBL; BC109424; AAI09425.1; -; mRNA.
DR   RefSeq; NP_001032449.1; NM_001037372.1.
DR   AlphaFoldDB; Q32LU7; -.
DR   SMR; Q32LU7; -.
DR   STRING; 7955.ENSDARP00000074588; -.
DR   PaxDb; Q32LU7; -.
DR   GeneID; 553325; -.
DR   KEGG; dre:553325; -.
DR   CTD; 55037; -.
DR   ZFIN; ZDB-GENE-030131-6849; ptcd3.
DR   eggNOG; KOG4422; Eukaryota.
DR   InParanoid; Q32LU7; -.
DR   OrthoDB; 405419at2759; -.
DR   PhylomeDB; Q32LU7; -.
DR   Reactome; R-DRE-5389840; Mitochondrial translation elongation.
DR   Reactome; R-DRE-5419276; Mitochondrial translation termination.
DR   PRO; PR:Q32LU7; -.
DR   Proteomes; UP000000437; Genome assembly.
DR   Proteomes; UP000814640; Unplaced.
DR   GO; GO:0005739; C:mitochondrion; ISS:UniProtKB.
DR   GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW.
DR   GO; GO:0043024; F:ribosomal small subunit binding; ISS:UniProtKB.
DR   GO; GO:0019843; F:rRNA binding; ISS:UniProtKB.
DR   GO; GO:0032543; P:mitochondrial translation; ISS:UniProtKB.
DR   GO; GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
DR   Gene3D; 1.25.40.10; -; 2.
DR   InterPro; IPR033443; PPR_long.
DR   InterPro; IPR037387; PTCD3.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   PANTHER; PTHR16276; PTHR16276; 1.
DR   Pfam; PF17177; PPR_long; 1.
PE   2: Evidence at transcript level;
KW   Mitochondrion; Reference proteome; Repeat; Ribonucleoprotein;
KW   Ribosomal protein; RNA-binding; rRNA-binding; Transit peptide;
KW   Translation regulation.
FT   TRANSIT         1..11
FT                   /note="Mitochondrion"
FT                   /evidence="ECO:0000255"
FT   CHAIN           12..667
FT                   /note="Pentatricopeptide repeat domain-containing protein
FT                   3, mitochondrial"
FT                   /id="PRO_0000305031"
FT   REPEAT          249..283
FT                   /note="PPR 1"
FT   REPEAT          284..323
FT                   /note="PPR 2"
FT   REPEAT          324..360
FT                   /note="PPR 3"
FT   REPEAT          361..400
FT                   /note="PPR 4"
FT   REPEAT          482..516
FT                   /note="PPR 5"
FT   REPEAT          565..599
FT                   /note="PPR 6"
FT   REGION          199..226
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        209..224
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   667 AA;  76005 MW;  541035ECC51ED801 CRC64;
     MASSCSQALR HHACKSSKIL RIHLQKSWTN RSFAAYQQPD VSSQEEIVIP KKKTWSKEAV
     LQALASTVKR DPTASDYRLQ DDSFLTPKTA SDFKLFCRSQ ESGRNAAKYF INKYPKYFEK
     DYAQPHIPCL MPETLDAQLE DVSEAALKER IQLRKVKAAV DLYDQLLQAG TSVSLDLTND
     LLDLICLYGE ADPVQETFEA EQRSEEMEDI QDETQTKKGR SPKASDLLKT SWKENNNAER
     IFGLLSEPNT RSYSALIRGM VKHAAYTQAF STYTDLLNNR LKADVHIFNA LLAAVPAVRP
     KYNEKWELIL DLLKQMAEQK VKPNLLTLNA ILKSLRRCGA LGRSQAFPVI SEMKVLSIEP
     SLASYNHLLA IFYRSGAQVQ TPTDVLVEVM NEVSGKSFTP QDPDDAQFFT TAMRVCLDTK
     DMEQAYRVHE LLGVGDNWRF MGSDFQQSIY YAWFFSLLCM MENIDVVMKW YRDLVPSVYY
     PSSNAMSDLL RALDTDSRLD LIPKIWKDMK QLGHGNRQQL VEEVLTLMAR EKHCPEVQES
     FADCALDIMK MYDTNERGKV IMSWTASSLS DVTTILLAAN RKQEAWEMLK LFRTHNRVPS
     AELLNQFVTC VKEAGQVSQA VELVQISAAF CLSETPKLIQ RVQQEFELSE EHKNILSDLE
     IQTFNGD