ATP4_ORYSJ
ID ATP4_ORYSJ Reviewed; 676 AA.
AC Q10PZ4; Q0DTZ4;
DT 25-OCT-2017, integrated into UniProtKB/Swiss-Prot.
DT 22-AUG-2006, sequence version 1.
DT 03-AUG-2022, entry version 112.
DE RecName: Full=Pentatricopeptide repeat-containing protein ATP4 homolog, chloroplastic {ECO:0000305};
DE Flags: Precursor;
GN OrderedLocusNames=Os03g0215900 {ECO:0000312|EMBL:BAF11294.2},
GN LOC_Os03g11670 {ECO:0000312|EMBL:ABF94642.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
CC -!- FUNCTION: Involved in translation and accumulation of chloroplast ATP
CC synthase subunits. {ECO:0000250|UniProtKB:B4F8Z1}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000255}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; DP000009; ABF94642.1; -; Genomic_DNA.
DR EMBL; AP008209; BAF11294.2; -; Genomic_DNA.
DR EMBL; AP014959; BAS82967.1; -; Genomic_DNA.
DR RefSeq; XP_015631289.1; XM_015775803.1.
DR AlphaFoldDB; Q10PZ4; -.
DR SMR; Q10PZ4; -.
DR STRING; 4530.OS03T0215900-00; -.
DR PaxDb; Q10PZ4; -.
DR PRIDE; Q10PZ4; -.
DR EnsemblPlants; Os03t0215900-01; Os03t0215900-01; Os03g0215900.
DR GeneID; 4332063; -.
DR Gramene; Os03t0215900-01; Os03t0215900-01; Os03g0215900.
DR KEGG; osa:4332063; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_018319_1_0_1; -.
DR InParanoid; Q10PZ4; -.
DR OMA; RPWQAKK; -.
DR OrthoDB; 1344243at2759; -.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR GO; GO:0009507; C:chloroplast; IBA:GO_Central.
DR GO; GO:0003729; F:mRNA binding; IEA:EnsemblPlants.
DR GO; GO:0009658; P:chloroplast organization; IEA:EnsemblPlants.
DR GO; GO:0031425; P:chloroplast RNA processing; IEA:EnsemblPlants.
DR GO; GO:0045727; P:positive regulation of translation; IEA:EnsemblPlants.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR033443; PPR_long.
DR InterPro; IPR002625; Smr_dom.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 1.
DR Pfam; PF13812; PPR_3; 1.
DR Pfam; PF17177; PPR_long; 1.
DR SMART; SM00463; SMR; 1.
DR TIGRFAMs; TIGR00756; PPR; 8.
DR PROSITE; PS51375; PPR; 10.
DR PROSITE; PS50828; SMR; 1.
PE 3: Inferred from homology;
KW Chloroplast; Plastid; Reference proteome; Repeat; Transit peptide;
KW Translation regulation.
FT TRANSIT 1..73
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 74..676
FT /note="Pentatricopeptide repeat-containing protein ATP4
FT homolog, chloroplastic"
FT /id="PRO_0000441905"
FT REPEAT 148..182
FT /note="PPR 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00708"
FT REPEAT 183..217
FT /note="PPR 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00708"
FT REPEAT 218..252
FT /note="PPR 3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00708"
FT REPEAT 253..287
FT /note="PPR 4"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00708"
FT REPEAT 288..322
FT /note="PPR 5"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00708"
FT REPEAT 323..353
FT /note="PPR 6"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00708"
FT REPEAT 358..388
FT /note="PPR 7"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00708"
FT REPEAT 396..430
FT /note="PPR 8"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00708"
FT REPEAT 431..465
FT /note="PPR 9"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00708"
FT REPEAT 532..566
FT /note="PPR 10"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00708"
FT DOMAIN 578..662
FT /note="Smr"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00321"
FT REGION 17..58
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 17..32
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 33..47
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 676 AA; 73346 MW; 70D81C0A2160C64E CRC64;
MASPSSLLSW PHRAISLSFQ PKNPSPSPAT ARVSVQDPPP PPSDANPSPG RSSNTSRYVW
VNPNSPRAAG LARARAGSGR RARLAAAAAA LAACEAGEAP VAAALEAAFP EPPSEQDAVI
VLNTTSARPA AVVLALWWFL RNAEVRKEVI LYNVALKALR KRRRWSDAEA LWEEMLREGV
QPDNATFSTV ISCARACGMP GKAVEWFEKM PDFGCSPDML TYSAVIDAYG RAGDAETALR
LYDRARAEKW QLDPVICATV IRVHSSSGNF DGALNVFEEM KAAGVKPNLV VYNTVLDAMG
RAMRPWVVKT IHRELVSQEA VPNKATYCCL LHAYTRARYG EDAMAVYRVM KDEVMDIDVV
LYNMLLSMCA DIGYVEEAEE IFRDMKASMD SRSKPDSWSY SSMVTLYSCT GNVAGAEGIL
NEMVEAGFKP NIFILTSLIR CYGKAGRTDD VVRSFAMLED LGITPDDRFC GCLLTVAAGT
PADELGKVIG CIDRSSAQLG AVVRLLVDAA APSEPLREAA GELLGGARGV VRMPYCNCLM
DLAVNLSQME KACALLDVAL RLGIYSNVQT RTQTQWSLHL RGLSVGAALT TLHVWMSDLY
AALQAGDELP PLLGIHTGQG KNTYSYKGLA TVFESHLKEL DAPFHEAPDK AGWFLTTSVA
ARHWLETKKS AELVAV
