PUB55_ARATH
ID PUB55_ARATH Reviewed; 568 AA.
AC P0C6E7; Q9LQ93;
DT 26-FEB-2008, integrated into UniProtKB/Swiss-Prot.
DT 26-FEB-2008, sequence version 1.
DT 25-MAY-2022, entry version 77.
DE RecName: Full=Putative U-box domain-containing protein 55;
DE EC=2.3.2.27;
DE AltName: Full=Plant U-box protein 55;
DE AltName: Full=RING-type E3 ubiquitin transferase PUB54 {ECO:0000305};
GN Name=PUB55; OrderedLocusNames=At1g01660; ORFNames=T1N6.4;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
CC -!- FUNCTION: Functions as an E3 ubiquitin ligase. {ECO:0000250}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine +
CC [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-
CC cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.;
CC EC=2.3.2.27;
CC -!- PATHWAY: Protein modification; protein ubiquitination.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAF78397.1; Type=Erroneous gene model prediction; Note=The predicted gene has been split into 2 genes: At1g01660 and At1g01670.; Evidence={ECO:0000305};
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DR EMBL; AC009273; AAF78397.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE27319.1; -; Genomic_DNA.
DR PIR; E86147; E86147.
DR RefSeq; NP_171672.1; NM_100048.1.
DR AlphaFoldDB; P0C6E7; -.
DR SMR; P0C6E7; -.
DR STRING; 3702.AT1G01660.1; -.
DR iPTMnet; P0C6E7; -.
DR PaxDb; P0C6E7; -.
DR PRIDE; P0C6E7; -.
DR EnsemblPlants; AT1G01660.1; AT1G01660.1; AT1G01660.
DR GeneID; 839461; -.
DR Gramene; AT1G01660.1; AT1G01660.1; AT1G01660.
DR KEGG; ath:AT1G01660; -.
DR Araport; AT1G01660; -.
DR TAIR; locus:2198165; AT1G01660.
DR eggNOG; ENOG502QQ1P; Eukaryota.
DR HOGENOM; CLU_036548_0_0_1; -.
DR InParanoid; P0C6E7; -.
DR PhylomeDB; P0C6E7; -.
DR UniPathway; UPA00143; -.
DR PRO; PR:P0C6E7; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; P0C6E7; baseline and differential.
DR Genevisible; P0C6E7; AT.
DR GO; GO:0004842; F:ubiquitin-protein transferase activity; IEA:InterPro.
DR Gene3D; 3.30.40.10; -; 1.
DR Gene3D; 3.40.50.620; -; 1.
DR InterPro; IPR014729; Rossmann-like_a/b/a_fold.
DR InterPro; IPR003613; Ubox_domain.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR Pfam; PF04564; U-box; 1.
DR SMART; SM00504; Ubox; 1.
DR PROSITE; PS51698; U_BOX; 1.
PE 3: Inferred from homology;
KW Coiled coil; Reference proteome; Transferase; Ubl conjugation pathway.
FT CHAIN 1..568
FT /note="Putative U-box domain-containing protein 55"
FT /id="PRO_0000322190"
FT DOMAIN 496..568
FT /note="U-box"
FT COILED 217..464
FT /evidence="ECO:0000255"
SQ SEQUENCE 568 AA; 66036 MW; 8EF70F7B1FE091AA CRC64;
MAELMAMGND VVHVAVKSDV RESRSTLLWA LRNLGAKKVC ILHVYQPKTA SPAARKLEEL
EAIMYETLHD YFDFCQQEGV NEDDIYISCI EMNDVKQGIL ELIHESKIKK LVMGAASDHH
YSEKMFDLKS RKAKYVYQHA PSSCEVMFMC DGHLIYTKEA NLEDCMGETE SEAGQSKPKL
YSSASPKCSA ELVSAIVAYI DTRRDRDMLE PNASEDQSES DRNDQLYRQL KQALMEVEES
KREAYEECVR RFKAENTAVE AIRSAREYEA MYNEEAKLRK EGKEALAKQR KMVEKTKQER
DDALIIILNG RKLYNEELRR RVEAEEMLGK EKEEHERTKK EIEEVRAIVQ DGTLYNEQLR
HRKEMEESMK RQEEELEKTK KEKEEACMIS KNLMQLYEDE VRQRKEAEEL VKRRREELEK
VKKEKEEACS VGQNFMRLYE EEARRRKGTE EELSKVAAEK DAASSVCSEI LLLLQSYTRR
HGTPSGFSDE DSVTRQPPSY FICPISQEVM REPRVAADGF TYEAESLREW LDNGHETSPM
TNLKLAHNNL VPNHALRSAI QEWLQRNS
