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PURNU_BACSU
ID   PURNU_BACSU             Reviewed;         278 AA.
AC   O31726;
DT   01-DEC-2000, integrated into UniProtKB/Swiss-Prot.
DT   01-JAN-1998, sequence version 1.
DT   03-AUG-2022, entry version 118.
DE   RecName: Full=Purine nucleoside phosphorylase YlmD;
DE            EC=2.4.2.1 {ECO:0000250|UniProtKB:P84138};
DE   AltName: Full=Adenosine deaminase YlmD;
DE            EC=3.5.4.4 {ECO:0000250|UniProtKB:P84138};
DE   AltName: Full=S-methyl-5'-thioadenosine phosphorylase YlmD;
DE            EC=2.4.2.28 {ECO:0000250|UniProtKB:P84138};
GN   Name=ylmD; OrderedLocusNames=BSU15370;
OS   Bacillus subtilis (strain 168).
OC   Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.
OX   NCBI_TaxID=224308;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=168;
RX   PubMed=9384377; DOI=10.1038/36786;
RA   Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V.,
RA   Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R.,
RA   Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S.,
RA   Bruschi C.V., Caldwell B., Capuano V., Carter N.M., Choi S.-K.,
RA   Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F.,
RA   Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D.,
RA   Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M.,
RA   Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P.,
RA   Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K.,
RA   Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S.,
RA   Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y.,
RA   Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G.,
RA   Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J.,
RA   Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C.,
RA   Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S.,
RA   Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B.,
RA   Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S.,
RA   Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M.,
RA   Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y.,
RA   Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J.,
RA   Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A.,
RA   Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M.,
RA   Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S.,
RA   Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E.,
RA   Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K.,
RA   Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E.,
RA   Yoshikawa H., Danchin A.;
RT   "The complete genome sequence of the Gram-positive bacterium Bacillus
RT   subtilis.";
RL   Nature 390:249-256(1997).
CC   -!- FUNCTION: Purine nucleoside enzyme that catalyzes the phosphorolysis of
CC       adenosine and inosine nucleosides, yielding D-ribose 1-phosphate and
CC       the respective free bases, adenine and hypoxanthine. Also catalyzes the
CC       phosphorolysis of S-methyl-5'-thioadenosine into adenine and S-methyl-
CC       5-thio-alpha-D-ribose 1-phosphate. Also has adenosine deaminase
CC       activity. {ECO:0000250|UniProtKB:P84138}.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=adenosine + phosphate = adenine + alpha-D-ribose 1-phosphate;
CC         Xref=Rhea:RHEA:27642, ChEBI:CHEBI:16335, ChEBI:CHEBI:16708,
CC         ChEBI:CHEBI:43474, ChEBI:CHEBI:57720; EC=2.4.2.1;
CC         Evidence={ECO:0000250|UniProtKB:P84138};
CC       PhysiologicalDirection=left-to-right; Xref=Rhea:RHEA:27643;
CC         Evidence={ECO:0000250|UniProtKB:P84138};
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=phosphate + S-methyl-5'-thioadenosine = adenine + S-methyl-5-
CC         thio-alpha-D-ribose 1-phosphate; Xref=Rhea:RHEA:11852,
CC         ChEBI:CHEBI:16708, ChEBI:CHEBI:17509, ChEBI:CHEBI:43474,
CC         ChEBI:CHEBI:58533; EC=2.4.2.28;
CC         Evidence={ECO:0000250|UniProtKB:P84138};
CC       PhysiologicalDirection=left-to-right; Xref=Rhea:RHEA:11853;
CC         Evidence={ECO:0000250|UniProtKB:P84138};
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=inosine + phosphate = alpha-D-ribose 1-phosphate +
CC         hypoxanthine; Xref=Rhea:RHEA:27646, ChEBI:CHEBI:17368,
CC         ChEBI:CHEBI:17596, ChEBI:CHEBI:43474, ChEBI:CHEBI:57720; EC=2.4.2.1;
CC         Evidence={ECO:0000250|UniProtKB:P84138};
CC       PhysiologicalDirection=left-to-right; Xref=Rhea:RHEA:27647;
CC         Evidence={ECO:0000250|UniProtKB:P84138};
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=adenosine + H(+) + H2O = inosine + NH4(+);
CC         Xref=Rhea:RHEA:24408, ChEBI:CHEBI:15377, ChEBI:CHEBI:15378,
CC         ChEBI:CHEBI:16335, ChEBI:CHEBI:17596, ChEBI:CHEBI:28938; EC=3.5.4.4;
CC         Evidence={ECO:0000250|UniProtKB:P84138};
CC       PhysiologicalDirection=left-to-right; Xref=Rhea:RHEA:24409;
CC         Evidence={ECO:0000250|UniProtKB:P84138};
CC   -!- COFACTOR:
CC       Name=Cu(2+); Xref=ChEBI:CHEBI:29036;
CC         Evidence={ECO:0000250|UniProtKB:P33644};
CC       Name=Zn(2+); Xref=ChEBI:CHEBI:29105;
CC         Evidence={ECO:0000250|UniProtKB:P84138};
CC   -!- SUBUNIT: Homodimer. {ECO:0000250|UniProtKB:Q1EIR0}.
CC   -!- SIMILARITY: Belongs to the purine nucleoside phosphorylase YfiH/LACC1
CC       family. {ECO:0000305}.
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DR   EMBL; AL009126; CAB13411.1; -; Genomic_DNA.
DR   PIR; D69876; D69876.
DR   RefSeq; NP_389420.1; NC_000964.3.
DR   RefSeq; WP_009967191.1; NZ_JNCM01000035.1.
DR   AlphaFoldDB; O31726; -.
DR   SMR; O31726; -.
DR   STRING; 224308.BSU15370; -.
DR   PaxDb; O31726; -.
DR   PRIDE; O31726; -.
DR   EnsemblBacteria; CAB13411; CAB13411; BSU_15370.
DR   GeneID; 939954; -.
DR   KEGG; bsu:BSU15370; -.
DR   PATRIC; fig|224308.179.peg.1675; -.
DR   eggNOG; COG1496; Bacteria.
DR   InParanoid; O31726; -.
DR   OMA; CFADCVP; -.
DR   PhylomeDB; O31726; -.
DR   BioCyc; BSUB:BSU15370-MON; -.
DR   Proteomes; UP000001570; Chromosome.
DR   GO; GO:0004000; F:adenosine deaminase activity; IEA:UniProtKB-EC.
DR   GO; GO:0005507; F:copper ion binding; IBA:GO_Central.
DR   GO; GO:0016491; F:oxidoreductase activity; IEA:UniProtKB-KW.
DR   GO; GO:0017061; F:S-methyl-5-thioadenosine phosphorylase activity; IEA:UniProtKB-EC.
DR   CDD; cd16833; YfiH; 1.
DR   Gene3D; 3.60.140.10; -; 1.
DR   InterPro; IPR003730; Cu_polyphenol_OxRdtase.
DR   InterPro; IPR038371; Cu_polyphenol_OxRdtase_sf.
DR   InterPro; IPR011324; Cytotoxic_necrot_fac-like_cat.
DR   PANTHER; PTHR30616; PTHR30616; 1.
DR   Pfam; PF02578; Cu-oxidase_4; 1.
DR   SUPFAM; SSF64438; SSF64438; 1.
DR   TIGRFAMs; TIGR00726; TIGR00726; 1.
PE   3: Inferred from homology;
KW   Copper; Hydrolase; Metal-binding; Oxidoreductase; Reference proteome;
KW   Transferase; Zinc.
FT   CHAIN           1..278
FT                   /note="Purine nucleoside phosphorylase YlmD"
FT                   /id="PRO_0000163157"
FT   BINDING         87
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_note="catalytic"
FT                   /evidence="ECO:0000250|UniProtKB:P84138"
FT   BINDING         132
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_note="catalytic"
FT                   /evidence="ECO:0000250|UniProtKB:P84138"
FT   BINDING         149
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_note="catalytic"
FT                   /evidence="ECO:0000250|UniProtKB:P84138"
SQ   SEQUENCE   278 AA;  30944 MW;  334595679F37CF04 CRC64;
     MNTYHPFSLT TPSTLMIQDW AQTNQNNKEV IAGFTTKNGG VSQKPFESLN TGLHVHDKDA
     DVVKNREYIA DMFNTDLQSW VFADQTHDNR VQKVTQRDRG KGAREYHTAL KATDGIYTNE
     KNVFLALCFA DCVPLFFYDP VKSLVGVAHA GWKGTVKQIG REMVKQWTEK EGSNPSDIYA
     VIGPSISGAC YTVDDRVMDA VRALPVSADL AANQTAKAQY QLDLKELNRL ILMDSGLASE
     QISVSGLCTE SEPSLFYSHR RDQGKTGRMM SFIGMKEA
 
 
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