PUX11_ARATH
ID PUX11_ARATH Reviewed; 531 AA.
AC Q9ZW74; Q8RWR0;
DT 01-APR-2015, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2002, sequence version 2.
DT 03-AUG-2022, entry version 137.
DE RecName: Full=Plant UBX domain-containing protein 11 {ECO:0000303|Ref.6};
DE Short=PUX11 {ECO:0000303|Ref.6};
DE AltName: Full=CDC48-interacting UBX-domain protein 11 {ECO:0000305};
GN Name=PUX11 {ECO:0000303|Ref.6};
GN OrderedLocusNames=At2g43210 {ECO:0000312|Araport:AT2G43210};
GN ORFNames=F14B2.15 {ECO:0000312|EMBL:AAC64310.2},
GN MFL8.1 {ECO:0000312|EMBL:AAM15157.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=19423640; DOI=10.1093/dnares/dsp009;
RA Iida K., Fukami-Kobayashi K., Toyoda A., Sakaki Y., Kobayashi M., Seki M.,
RA Shinozaki K.;
RT "Analysis of multiple occurrences of alternative splicing events in
RT Arabidopsis thaliana using novel sequenced full-length cDNAs.";
RL DNA Res. 16:155-164(2009).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [6]
RP GENE FAMILY, AND INTERACTION WITH CDC48A.
RA Posthuma R., Rancour D., Park S., Bates B., Bednarek S.;
RT "The plant UBX-domain containing (PUX) protein family regulates the
RT function of Arabidopsis CDC48, a conserved essential AAA-ATPase.";
RL (In) Proceedings of the 16th international conference on Arabidopsis
RL research, abstract#116, Madison (2005).
RN [7]
RP ACETYLATION [LARGE SCALE ANALYSIS] AT MET-1, AND IDENTIFICATION BY MASS
RP SPECTROMETRY [LARGE SCALE ANALYSIS].
RX PubMed=22223895; DOI=10.1074/mcp.m111.015131;
RA Bienvenut W.V., Sumpton D., Martinez A., Lilla S., Espagne C., Meinnel T.,
RA Giglione C.;
RT "Comparative large-scale characterisation of plant vs. mammal proteins
RT reveals similar and idiosyncratic N-alpha acetylation features.";
RL Mol. Cell. Proteomics 11:M111.015131-M111.015131(2012).
CC -!- SUBUNIT: Interacts with CDC48A. {ECO:0000269|Ref.6}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AK316805; Type=Frameshift; Evidence={ECO:0000305};
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DR EMBL; AC004450; AAC64310.2; -; Genomic_DNA.
DR EMBL; AC006224; AAM15157.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC10229.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC10230.1; -; Genomic_DNA.
DR EMBL; CP002685; ANM62378.1; -; Genomic_DNA.
DR EMBL; AY091770; AAM10318.1; -; mRNA.
DR EMBL; BT002277; AAN72288.1; -; mRNA.
DR EMBL; AK316805; -; NOT_ANNOTATED_CDS; mRNA.
DR EMBL; AY084884; AAM61447.1; -; mRNA.
DR PIR; D84863; D84863.
DR RefSeq; NP_001324539.1; NM_001337021.1.
DR RefSeq; NP_850390.1; NM_180059.1.
DR RefSeq; NP_850391.1; NM_180060.3.
DR AlphaFoldDB; Q9ZW74; -.
DR SMR; Q9ZW74; -.
DR STRING; 3702.AT2G43210.1; -.
DR TCDB; 3.A.16.1.5; the endoplasmic reticular retrotranslocon (er-rt) family.
DR iPTMnet; Q9ZW74; -.
DR PaxDb; Q9ZW74; -.
DR PRIDE; Q9ZW74; -.
DR ProteomicsDB; 226459; -.
DR EnsemblPlants; AT2G43210.1; AT2G43210.1; AT2G43210.
DR EnsemblPlants; AT2G43210.2; AT2G43210.2; AT2G43210.
DR EnsemblPlants; AT2G43210.3; AT2G43210.3; AT2G43210.
DR GeneID; 818922; -.
DR Gramene; AT2G43210.1; AT2G43210.1; AT2G43210.
DR Gramene; AT2G43210.2; AT2G43210.2; AT2G43210.
DR Gramene; AT2G43210.3; AT2G43210.3; AT2G43210.
DR KEGG; ath:AT2G43210; -.
DR Araport; AT2G43210; -.
DR TAIR; locus:2041046; AT2G43210.
DR eggNOG; KOG2507; Eukaryota.
DR HOGENOM; CLU_030220_0_0_1; -.
DR InParanoid; Q9ZW74; -.
DR OMA; HNNTSEN; -.
DR OrthoDB; 1334491at2759; -.
DR PhylomeDB; Q9ZW74; -.
DR PRO; PR:Q9ZW74; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q9ZW74; baseline and differential.
DR Genevisible; Q9ZW74; AT.
DR InterPro; IPR036249; Thioredoxin-like_sf.
DR InterPro; IPR029071; Ubiquitin-like_domsf.
DR InterPro; IPR001012; UBX_dom.
DR Pfam; PF00789; UBX; 1.
DR SMART; SM00166; UBX; 1.
DR SUPFAM; SSF52833; SSF52833; 1.
DR SUPFAM; SSF54236; SSF54236; 1.
DR PROSITE; PS50033; UBX; 1.
PE 1: Evidence at protein level;
KW Acetylation; Reference proteome; Ubl conjugation pathway.
FT CHAIN 1..531
FT /note="Plant UBX domain-containing protein 11"
FT /id="PRO_0000432609"
FT DOMAIN 312..390
FT /note="UBX"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00215"
FT REGION 160..316
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 441..531
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 161..192
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 202..218
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 223..237
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 256..270
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 287..316
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 441..498
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 510..524
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOD_RES 1
FT /note="N-acetylmethionine"
FT /evidence="ECO:0007744|PubMed:22223895"
FT CONFLICT 413
FT /note="D -> N (in Ref. 3; AAM10318/AAN72288)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 531 AA; 57099 MW; F2E8BA596C2A1863 CRC64;
MEALSSLTFK GSLPEAIFEA KGKKKLFVVY ISGEDEESDK LNRLTWTDAS VADSLSKYCI
LVHIQAGSVD ATNFSAIYPY SSVPCIAAIG FSGTQVWRTE GFITAEDLAS SLEKAWLGLH
IQETTASIFS AALASQNSET PVSSASSVVL PPGSVPLDAA VASPSTASSV QPSETKSTVT
SASTTENNDG TVAVKGKESA EPSNLCDTTK NQPAPSVDGT KANVEHEATE TPLRVQAEKE
PIRPTAPGTN DNTSRVRSSV DRKRKQGTVI NEEDSGVGVS GRDINLTKSV DTKETMKPKD
EGGEEEDGEK SKKASDVHLN IRLPDGSSLQ EKFSVTSILR MVKDYVNSNQ TIGLGAYDLA
VPYPRKVYTD QDLDKSLSEL RLFDRQALVV VPRKRATVYQ RGTSYSESNN NTDPNSGGYF
AYVRRVLSYA NPFSYFGGGT ANASSSVPER QTRPNTEVRN NLGQVGTSFQ DPSEGRSNVR
NRRPTTSRIG SNIHTLNHNE DEAPFGDGNA FWNGNSTQYG GGSGGDSNDR R
