PUX16_ARATH
ID PUX16_ARATH Reviewed; 415 AA.
AC P0DKI5; F4JUN8; O23283;
DT 01-APR-2015, integrated into UniProtKB/Swiss-Prot.
DT 01-APR-2015, sequence version 1.
DT 25-MAY-2022, entry version 42.
DE RecName: Full=Plant UBX domain-containing protein 16 {ECO:0000305};
DE Short=PUX16 {ECO:0000305};
GN Name=PUX16 {ECO:0000305};
GN OrderedLocusNames=At4g14245 {ECO:0000312|Araport:AT4G14245};
GN ORFNames=dl3165c {ECO:0000312|EMBL:CAB10204.1},
GN FCAALL.151 {ECO:0000312|EMBL:CAB78467.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9461215; DOI=10.1038/35140;
RA Bevan M., Bancroft I., Bent E., Love K., Goodman H.M., Dean C.,
RA Bergkamp R., Dirkse W., van Staveren M., Stiekema W., Drost L., Ridley P.,
RA Hudson S.-A., Patel K., Murphy G., Piffanelli P., Wedler H., Wedler E.,
RA Wambutt R., Weitzenegger T., Pohl T., Terryn N., Gielen J., Villarroel R.,
RA De Clercq R., van Montagu M., Lecharny A., Aubourg S., Gy I., Kreis M.,
RA Lao N., Kavanagh T., Hempel S., Kotter P., Entian K.-D., Rieger M.,
RA Schaefer M., Funk B., Mueller-Auer S., Silvey M., James R., Monfort A.,
RA Pons A., Puigdomenech P., Douka A., Voukelatou E., Milioni D.,
RA Hatzopoulos P., Piravandi E., Obermaier B., Hilbert H., Duesterhoeft A.,
RA Moores T., Jones J.D.G., Eneva T., Palme K., Benes V., Rechmann S.,
RA Ansorge W., Cooke R., Berger C., Delseny M., Voet M., Volckaert G.,
RA Mewes H.-W., Klosterman S., Schueller C., Chalwatzis N.;
RT "Analysis of 1.9 Mb of contiguous sequence from chromosome 4 of Arabidopsis
RT thaliana.";
RL Nature 391:485-488(1998).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14993207; DOI=10.1101/gr.1515604;
RA Castelli V., Aury J.-M., Jaillon O., Wincker P., Clepet C., Menard M.,
RA Cruaud C., Quetier F., Scarpelli C., Schaechter V., Temple G., Caboche M.,
RA Weissenbach J., Salanoubat M.;
RT "Whole genome sequence comparisons and 'full-length' cDNA sequences: a
RT combined approach to evaluate and improve Arabidopsis genome annotation.";
RL Genome Res. 14:406-413(2004).
CC -!- SEQUENCE CAUTION:
CC Sequence=BX827765; Type=Frameshift; Evidence={ECO:0000305};
CC Sequence=CAB10204.1; Type=Erroneous gene model prediction; Note=The predicted gene At4g14250 has been split into 2 genes: At4g14245 and At4g14250.; Evidence={ECO:0000305};
CC Sequence=CAB10204.1; Type=Frameshift; Evidence={ECO:0000305};
CC Sequence=CAB78467.1; Type=Erroneous gene model prediction; Note=The predicted gene At4g14250 has been split into 2 genes: At4g14245 and At4g14250.; Evidence={ECO:0000305};
CC Sequence=CAB78467.1; Type=Frameshift; Evidence={ECO:0000305};
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DR EMBL; Z97335; CAB10204.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AL161538; CAB78467.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002687; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; BX827738; -; NOT_ANNOTATED_CDS; mRNA.
DR EMBL; BX827765; -; NOT_ANNOTATED_CDS; mRNA.
DR PIR; B71404; B71404.
DR AlphaFoldDB; P0DKI5; -.
DR SMR; P0DKI5; -.
DR PaxDb; P0DKI5; -.
DR EnsemblPlants; AT4G14245.1; AT4G14245.1; AT4G14245.
DR Gramene; AT4G14245.1; AT4G14245.1; AT4G14245.
DR Araport; AT4G14245; -.
DR PRO; PR:P0DKI5; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; P0DKI5; baseline and differential.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0043130; F:ubiquitin binding; IBA:GO_Central.
DR GO; GO:0043161; P:proteasome-mediated ubiquitin-dependent protein catabolic process; IBA:GO_Central.
DR InterPro; IPR036249; Thioredoxin-like_sf.
DR InterPro; IPR006577; UAS.
DR InterPro; IPR029071; Ubiquitin-like_domsf.
DR InterPro; IPR001012; UBX_dom.
DR Pfam; PF00789; UBX; 1.
DR SMART; SM00594; UAS; 1.
DR SUPFAM; SSF52833; SSF52833; 1.
DR SUPFAM; SSF54236; SSF54236; 1.
DR PROSITE; PS50033; UBX; 1.
PE 2: Evidence at transcript level;
KW Reference proteome; Ubl conjugation pathway.
FT CHAIN 1..415
FT /note="Plant UBX domain-containing protein 16"
FT /id="PRO_0000432614"
FT DOMAIN 19..69
FT /note="UBA"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00212"
FT DOMAIN 333..413
FT /note="UBX"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00215"
FT CONFLICT 9
FT /note="N -> D (in Ref. 4; BX827765)"
FT /evidence="ECO:0000305"
FT CONFLICT 15
FT /note="T -> R (in Ref. 4; BX827765)"
FT /evidence="ECO:0000305"
FT CONFLICT 118..119
FT /note="KN -> ED (in Ref. 4; BX827765)"
FT /evidence="ECO:0000305"
FT CONFLICT 186
FT /note="I -> M (in Ref. 4; BX827765)"
FT /evidence="ECO:0000305"
FT CONFLICT 293
FT /note="D -> E (in Ref. 4; BX827738)"
FT /evidence="ECO:0000305"
FT CONFLICT 354
FT /note="F -> S (in Ref. 4; BX827765)"
FT /evidence="ECO:0000305"
FT CONFLICT 368
FT /note="Y -> H (in Ref. 4; BX827765)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 415 AA; 47683 MW; BA005A0F8068B075 CRC64;
MGHFFSANNR QRAITTRLQL DEEIVLFRQD QLISSFLEIA VDQTAETARI LLQTTDWNID
QAVNLFLTNN AMYREVVDST TSGTSDDSDS RSSFSFPPPS YILHEGLFEY AKYVSIEKNL
WLVVNLQSRT ELGSHILNRD VWANDAVSRT IESHFIVWQV YDDTNEGQKI SSFYKIEAPP
PVVFVINPIT GQKMHMWSGV IEAESIVEDL MMFWDAGPHE NIASLTRNRR TETAETCLSS
YNFYETPAPS WGEEFEEEDN WSSRSNNNQV VAPTWEKELE EQDEWEIWSS RSDTDDFVPP
FMGDEYEDPD EVKEEEICLV FPVLTEEPKG DCDRSVVCSL CVRFPDGRRK QRKFLKSEPI
QLLWSFCYSH IDESEKKAFK LVQAIPGASK TLDCEADATF DQSGLANSLI SVTWE
