PUX6_ARATH
ID PUX6_ARATH Reviewed; 435 AA.
AC F4IXN6; Q9LVE1;
DT 01-APR-2015, integrated into UniProtKB/Swiss-Prot.
DT 28-JUN-2011, sequence version 1.
DT 03-AUG-2022, entry version 64.
DE RecName: Full=Plant UBX domain-containing protein 6 {ECO:0000303|Ref.3};
DE Short=PUX6 {ECO:0000303|Ref.3};
GN Name=PUX6 {ECO:0000303|Ref.3};
GN OrderedLocusNames=At3g21660 {ECO:0000312|Araport:AT3G21660};
GN ORFNames=MIL23.23 {ECO:0000312|EMBL:BAB02361.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10819329; DOI=10.1093/dnares/7.2.131;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence
RT features of the regions of 4,504,864 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:131-135(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RA Posthuma R., Rancour D., Park S., Bates B., Bednarek S.;
RT "The plant UBX-domain containing (PUX) protein family regulates the
RT function of Arabidopsis CDC48, a conserved essential AAA-ATPase.";
RL (In) Proceedings of the 16th international conference on Arabidopsis
RL research, abstract#116, Madison (2005).
CC -!- SEQUENCE CAUTION:
CC Sequence=BAB02361.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AB019232; BAB02361.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002686; AEE76535.1; -; Genomic_DNA.
DR RefSeq; NP_188803.1; NM_113061.2.
DR AlphaFoldDB; F4IXN6; -.
DR SMR; F4IXN6; -.
DR STRING; 3702.AT3G21660.1; -.
DR TCDB; 3.A.16.1.5; the endoplasmic reticular retrotranslocon (er-rt) family.
DR PaxDb; F4IXN6; -.
DR PRIDE; F4IXN6; -.
DR EnsemblPlants; AT3G21660.1; AT3G21660.1; AT3G21660.
DR GeneID; 821720; -.
DR Gramene; AT3G21660.1; AT3G21660.1; AT3G21660.
DR KEGG; ath:AT3G21660; -.
DR Araport; AT3G21660; -.
DR TAIR; locus:2089920; AT3G21660.
DR eggNOG; KOG2086; Eukaryota.
DR HOGENOM; CLU_029402_4_2_1; -.
DR InParanoid; F4IXN6; -.
DR OMA; IHEAHLA; -.
DR PRO; PR:F4IXN6; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; F4IXN6; baseline and differential.
DR Genevisible; F4IXN6; AT.
DR GO; GO:0005829; C:cytosol; IBA:GO_Central.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0043130; F:ubiquitin binding; IBA:GO_Central.
DR GO; GO:0000045; P:autophagosome assembly; IBA:GO_Central.
DR GO; GO:0007030; P:Golgi organization; IBA:GO_Central.
DR GO; GO:0061025; P:membrane fusion; IBA:GO_Central.
DR GO; GO:0031468; P:nuclear membrane reassembly; IBA:GO_Central.
DR GO; GO:0043161; P:proteasome-mediated ubiquitin-dependent protein catabolic process; IBA:GO_Central.
DR Gene3D; 3.30.420.210; -; 2.
DR InterPro; IPR036241; NSFL1C_SEP_dom_sf.
DR InterPro; IPR012989; SEP_domain.
DR InterPro; IPR029071; Ubiquitin-like_domsf.
DR InterPro; IPR001012; UBX_dom.
DR Pfam; PF08059; SEP; 2.
DR Pfam; PF00789; UBX; 1.
DR SMART; SM00553; SEP; 2.
DR SUPFAM; SSF102848; SSF102848; 2.
DR SUPFAM; SSF54236; SSF54236; 1.
DR PROSITE; PS51399; SEP; 2.
DR PROSITE; PS50033; UBX; 1.
PE 4: Predicted;
KW Reference proteome; Repeat; Ubl conjugation pathway.
FT CHAIN 1..435
FT /note="Plant UBX domain-containing protein 6"
FT /id="PRO_0000432604"
FT DOMAIN 150..211
FT /note="SEP 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00732"
FT DOMAIN 268..343
FT /note="SEP 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00732"
FT DOMAIN 357..434
FT /note="UBX"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00215"
FT REGION 1..150
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 208..265
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 311..352
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..17
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 31..65
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 112..149
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 241..265
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 435 AA; 47950 MW; A8C757F32EAC413B CRC64;
MDVNSPETTE KHLNEVSADA AKPNVPNPND ELLRRNPSSF PNLRIKIPTS SFSTFDGSSG
YSPSRLQLRP PWPSLKRAAA NPFSRQNKRR QGAGNVRIDD FSGGTGSDSD EAVEHYGGEE
NRAIERPEQS SRSMSEETVS SELEEEPQKV FTHTVTSWSN GFTVDDSSLK TLDDPENATF
LEIISSMESP RELGQVRVQV KIISREEENY TESQAGSDSA STKPPPALAM RAKESAIERS
EQSSKVLSGE TDSAELQEQQ QEDQPYEVVT YTVTIWRNGF TVDDDPFKSL DDPENAAFLE
YMPEDNKFGV PTTTRSTSCS SQTHQELQTL AGSESTSTEP PLTTTQPPSM SSLVVDPAAP
TTSIQLILAD STRIVTQFNT HHTIRDIRCF IDTSRPDGSK DYQLLIMGSP PTPLSDFDQT
IEKAGIANSV LVQKF
