PX111_ORYSJ
ID PX111_ORYSJ Reviewed; 237 AA.
AC Q10SM7; B7EWP8;
DT 29-APR-2008, integrated into UniProtKB/Swiss-Prot.
DT 22-AUG-2006, sequence version 1.
DT 03-AUG-2022, entry version 88.
DE RecName: Full=Peroxisomal membrane protein 11-1;
DE AltName: Full=OsPEX11-1;
DE AltName: Full=Peroxin-11-1;
GN Name=PEX11-1; OrderedLocusNames=Os03g0117100, LOC_Os03g02590;
GN ORFNames=OsJ_09180 {ECO:0000312|EMBL:EEE58215.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP TISSUE SPECIFICITY, DEVELOPMENTAL STAGE, INDUCTION, GENE FAMILY, AND
RP NOMENCLATURE.
RX PubMed=18291602; DOI=10.1016/j.gene.2008.01.006;
RA Nayidu N.K., Wang L., Xie W., Zhang C., Fan C., Lian X., Zhang Q.,
RA Xiong L.;
RT "Comprehensive sequence and expression profile analysis of PEX11 gene
RT family in rice.";
RL Gene 412:59-70(2008).
CC -!- FUNCTION: Involved in peroxisomal proliferation. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Peroxisome membrane {ECO:0000250}; Multi-pass
CC membrane protein {ECO:0000250}.
CC -!- TISSUE SPECIFICITY: Expressed in seedlings, leaf sheaths, flag leaf,
CC panicles and spikelets. {ECO:0000269|PubMed:18291602}.
CC -!- DEVELOPMENTAL STAGE: Expressed in endosperm 21 days after pollination.
CC {ECO:0000269|PubMed:18291602}.
CC -!- INDUCTION: By abscisic acid, H(2)O(2) and nitrogen deprivation. Down-
CC regulated by salt stress. {ECO:0000269|PubMed:18291602}.
CC -!- SIMILARITY: Belongs to the peroxin-11 family. {ECO:0000305}.
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DR EMBL; DP000009; ABF93659.1; -; Genomic_DNA.
DR EMBL; AP008209; BAF10679.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS81988.1; -; Genomic_DNA.
DR EMBL; CM000140; EEE58215.1; -; Genomic_DNA.
DR EMBL; AK104570; BAG96795.1; -; mRNA.
DR EMBL; AK104706; BAG96893.1; -; mRNA.
DR RefSeq; XP_015630822.1; XM_015775336.1.
DR RefSeq; XP_015630823.1; XM_015775337.1.
DR AlphaFoldDB; Q10SM7; -.
DR STRING; 4530.OS03T0117100-01; -.
DR PaxDb; Q10SM7; -.
DR PRIDE; Q10SM7; -.
DR EnsemblPlants; Os03t0117100-01; Os03t0117100-01; Os03g0117100.
DR EnsemblPlants; Os03t0117100-02; Os03t0117100-02; Os03g0117100.
DR GeneID; 4331408; -.
DR Gramene; Os03t0117100-01; Os03t0117100-01; Os03g0117100.
DR Gramene; Os03t0117100-02; Os03t0117100-02; Os03g0117100.
DR KEGG; osa:4331408; -.
DR eggNOG; KOG4186; Eukaryota.
DR HOGENOM; CLU_075417_0_0_1; -.
DR InParanoid; Q10SM7; -.
DR OMA; LQNSNER; -.
DR OrthoDB; 1394894at2759; -.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000007752; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR Genevisible; Q10SM7; OS.
DR GO; GO:0005779; C:integral component of peroxisomal membrane; IEA:InterPro.
DR GO; GO:0005778; C:peroxisomal membrane; IBA:GO_Central.
DR GO; GO:0042802; F:identical protein binding; IEA:UniProt.
DR GO; GO:0016559; P:peroxisome fission; IBA:GO_Central.
DR GO; GO:0044375; P:regulation of peroxisome size; IBA:GO_Central.
DR InterPro; IPR008733; PEX11.
DR Pfam; PF05648; PEX11; 1.
PE 2: Evidence at transcript level;
KW Membrane; Peroxisome; Peroxisome biogenesis; Reference proteome;
KW Transmembrane; Transmembrane helix.
FT CHAIN 1..237
FT /note="Peroxisomal membrane protein 11-1"
FT /id="PRO_0000330300"
FT TOPO_DOM 1..92
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 93..113
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 114..204
FT /note="Lumenal"
FT /evidence="ECO:0000255"
FT TRANSMEM 205..223
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 224..237
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
SQ SEQUENCE 237 AA; 26425 MW; C34A21013652806B CRC64;
MSTLDATRAE LGLVVLYLNK AEARDKICRA IQYGSKFISN GQPGTAQDVD RSTTLARKVF
RLLKWVNDLH GLISPPAKGT PLTLVLLGKS KNALLSTFLF LDQFVWLGRT GIYKNKERTD
RIVRISLYCW MASSVCAGLV ELGELKRLSK SMRKLARELR DTDKYENDQY KSKMKQSDER
LLALVKAAMD VVVAVGLLQL SPKKITPRVT GAFGFVTSLI SCYQQLPSRA PAIKVKA
