QKIL2_ARATH
ID QKIL2_ARATH Reviewed; 315 AA.
AC Q9FKT4; Q8RXJ4;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 25-MAY-2022, entry version 112.
DE RecName: Full=KH domain-containing protein At5g56140;
DE AltName: Full=Quaking-like protein 2;
GN OrderedLocusNames=At5g56140; ORFNames=MDA7.20;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9679202; DOI=10.1093/dnares/5.2.131;
RA Kaneko T., Kotani H., Nakamura Y., Sato S., Asamizu E., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. V. Sequence
RT features of the regions of 1,381,565 bp covered by twenty one physically
RT assigned P1 and TAC clones.";
RL DNA Res. 5:131-145(1998).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY.
RX PubMed=11809873; DOI=10.1093/nar/30.3.623;
RA Lorkovic Z.J., Barta A.;
RT "Genome analysis: RNA recognition motif (RRM) and K homology (KH) domain
RT RNA-binding proteins from the flowering plant Arabidopsis thaliana.";
RL Nucleic Acids Res. 30:623-635(2002).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
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DR EMBL; AB011476; BAB09296.1; -; Genomic_DNA.
DR EMBL; CP002688; AED96725.1; -; Genomic_DNA.
DR EMBL; AY080852; AAL87326.1; -; mRNA.
DR EMBL; BT000873; AAN41273.1; -; mRNA.
DR RefSeq; NP_200425.1; NM_124996.4.
DR AlphaFoldDB; Q9FKT4; -.
DR SMR; Q9FKT4; -.
DR STRING; 3702.AT5G56140.1; -.
DR iPTMnet; Q9FKT4; -.
DR PaxDb; Q9FKT4; -.
DR PRIDE; Q9FKT4; -.
DR ProteomicsDB; 236476; -.
DR EnsemblPlants; AT5G56140.1; AT5G56140.1; AT5G56140.
DR GeneID; 835713; -.
DR Gramene; AT5G56140.1; AT5G56140.1; AT5G56140.
DR KEGG; ath:AT5G56140; -.
DR Araport; AT5G56140; -.
DR TAIR; locus:2161845; AT5G56140.
DR eggNOG; KOG1588; Eukaryota.
DR HOGENOM; CLU_065679_0_1_1; -.
DR InParanoid; Q9FKT4; -.
DR OMA; RADLNGW; -.
DR OrthoDB; 1565749at2759; -.
DR PhylomeDB; Q9FKT4; -.
DR PRO; PR:Q9FKT4; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FKT4; baseline and differential.
DR Genevisible; Q9FKT4; AT.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR GO; GO:0048024; P:regulation of mRNA splicing, via spliceosome; IBA:GO_Central.
DR Gene3D; 3.30.1370.10; -; 1.
DR InterPro; IPR045071; BBP-like.
DR InterPro; IPR004087; KH_dom.
DR InterPro; IPR036612; KH_dom_type_1_sf.
DR InterPro; IPR032377; STAR_dimer.
DR PANTHER; PTHR11208; PTHR11208; 1.
DR Pfam; PF16544; STAR_dimer; 1.
DR SMART; SM00322; KH; 1.
DR SUPFAM; SSF54791; SSF54791; 1.
PE 2: Evidence at transcript level;
KW Nucleus; Phosphoprotein; Reference proteome; RNA-binding.
FT CHAIN 1..315
FT /note="KH domain-containing protein At5g56140"
FT /id="PRO_0000357029"
FT DOMAIN 171..238
FT /note="KH"
FT REGION 1..53
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 136..158
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 289..315
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 30..53
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 291..305
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOD_RES 300
FT /note="Phosphoserine"
FT /evidence="ECO:0000250|UniProtKB:Q9ZVI3"
FT CONFLICT 249
FT /note="D -> N (in Ref. 3; AAL87326)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 315 AA; 33985 MW; 5D5E58E3D7D41E92 CRC64;
MMMMSSLGGG GGGGGGSGGG IGGGGGGRFM TYSSSLSVPP SAPQSPNYSG GLRSQSSVFV
EQEKYLSELL AERHKLTPFL PVLPHAFRLL NQEILRVTTL LENATVLSQS GLDHPSPLAS
GGIFQNARAD MNGWASQFPS ERSVPSSPGP NWLNSPGSSS GLIAKRTIRV DIPVDNYPNF
NFVGRLLGPR GNSLKRVEAS TDCRVLIRGR GSIKDPIKEE MMRGKPGYEH LNEPLHILVE
AELPIEIVDA RLMQAREILD DLLTPMEETH DMYKKQQLRE LALLNGTLRE EGSPMSGSVS
PYNSLGMKRA KTREG
