R10A3_ARATH
ID R10A3_ARATH Reviewed; 217 AA.
AC P59231; P53029; Q9FMQ7;
DT 27-JAN-2003, integrated into UniProtKB/Swiss-Prot.
DT 27-JAN-2003, sequence version 1.
DT 25-MAY-2022, entry version 134.
DE RecName: Full=60S ribosomal protein L10a-3;
GN Name=RPL10AC; OrderedLocusNames=At5g22440; ORFNames=MWD9.24;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9501997; DOI=10.1093/dnares/4.6.401;
RA Nakamura Y., Sato S., Kaneko T., Kotani H., Asamizu E., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. III. Sequence
RT features of the regions of 1,191,918 bp covered by seventeen physically
RT assigned P1 clones.";
RL DNA Res. 4:401-414(1997).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1-78.
RC STRAIN=cv. Columbia;
RX PubMed=8580968; DOI=10.1046/j.1365-313x.1996.09010101.x;
RA Cooke R., Raynal M., Laudie M., Grellet F., Delseny M., Morris P.-C.,
RA Guerrier D., Giraudat J., Quigley F., Clabault G., Li Y.-F., Mache R.,
RA Krivitzky M., Gy I.J.-J., Kreis M., Lecharny A., Parmentier Y., Marbach J.,
RA Fleck J., Clement B., Philipps G., Herve C., Bardet C., Tremousaygue D.,
RA Lescure B., Lacomme C., Roby D., Jourjon M.-F., Chabrier P.,
RA Charpenteau J.-L., Desprez T., Amselem J., Chiapello H., Hoefte H.;
RT "Further progress towards a catalogue of all Arabidopsis genes: analysis of
RT a set of 5000 non-redundant ESTs.";
RL Plant J. 9:101-124(1996).
RN [5]
RP GENE FAMILY ORGANIZATION, AND NOMENCLATURE.
RX PubMed=11598216; DOI=10.1104/pp.010265;
RA Barakat A., Szick-Miranda K., Chang I.-F., Guyot R., Blanc G., Cooke R.,
RA Delseny M., Bailey-Serres J.;
RT "The organization of cytoplasmic ribosomal protein genes in the Arabidopsis
RT genome.";
RL Plant Physiol. 127:398-415(2001).
RN [6]
RP INTERACTION WITH NUG2.
RX PubMed=21205822; DOI=10.1074/jbc.m110.200816;
RA Im C.H., Hwang S.M., Son Y.S., Heo J.B., Bang W.Y., Suwastika I.N.,
RA Shiina T., Bahk J.D.;
RT "Nuclear/nucleolar GTPase 2 proteins as a subfamily of YlqF/YawG GTPases
RT function in pre-60S ribosomal subunit maturation of mono- and
RT dicotyledonous plants.";
RL J. Biol. Chem. 286:8620-8632(2011).
CC -!- SUBUNIT: Interacts with the GTPase NUG2. {ECO:0000269|PubMed:21205822}.
CC -!- SIMILARITY: Belongs to the universal ribosomal protein uL1 family.
CC {ECO:0000305}.
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DR EMBL; AB007651; BAB08343.1; -; Genomic_DNA.
DR EMBL; CP002688; AED93026.1; -; Genomic_DNA.
DR EMBL; CP002688; AED93027.1; -; Genomic_DNA.
DR EMBL; AY037253; AAK59854.1; -; mRNA.
DR EMBL; AY077657; AAL76135.1; -; mRNA.
DR EMBL; F19997; CAA23376.1; -; mRNA.
DR RefSeq; NP_001078612.1; NM_001085143.1.
DR RefSeq; NP_197636.1; NM_122149.5.
DR AlphaFoldDB; P59231; -.
DR SMR; P59231; -.
DR BioGRID; 17580; 123.
DR STRING; 3702.AT5G22440.2; -.
DR PaxDb; P59231; -.
DR PRIDE; P59231; -.
DR ProteomicsDB; 236550; -.
DR EnsemblPlants; AT5G22440.1; AT5G22440.1; AT5G22440.
DR EnsemblPlants; AT5G22440.2; AT5G22440.2; AT5G22440.
DR GeneID; 832305; -.
DR Gramene; AT5G22440.1; AT5G22440.1; AT5G22440.
DR Gramene; AT5G22440.2; AT5G22440.2; AT5G22440.
DR KEGG; ath:AT5G22440; -.
DR Araport; AT5G22440; -.
DR TAIR; locus:2176337; AT5G22440.
DR eggNOG; KOG1570; Eukaryota.
DR HOGENOM; CLU_062853_3_0_1; -.
DR InParanoid; P59231; -.
DR OMA; KRHFTET; -.
DR OrthoDB; 1172076at2759; -.
DR PhylomeDB; P59231; -.
DR PRO; PR:P59231; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; P59231; baseline and differential.
DR Genevisible; P59231; AT.
DR GO; GO:0022625; C:cytosolic large ribosomal subunit; HDA:TAIR.
DR GO; GO:0022626; C:cytosolic ribosome; HDA:TAIR.
DR GO; GO:0005730; C:nucleolus; HDA:TAIR.
DR GO; GO:0009536; C:plastid; HDA:TAIR.
DR GO; GO:0042788; C:polysomal ribosome; IDA:CAFA.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0003735; F:structural constituent of ribosome; IDA:CAFA.
DR GO; GO:0000470; P:maturation of LSU-rRNA; IBA:GO_Central.
DR GO; GO:0006412; P:translation; IEA:InterPro.
DR CDD; cd00403; Ribosomal_L1; 1.
DR Gene3D; 3.40.50.790; -; 1.
DR InterPro; IPR002143; Ribosomal_L1.
DR InterPro; IPR023674; Ribosomal_L1-like.
DR InterPro; IPR028364; Ribosomal_L1/biogenesis.
DR InterPro; IPR016095; Ribosomal_L1_3-a/b-sand.
DR InterPro; IPR023673; Ribosomal_L1_CS.
DR Pfam; PF00687; Ribosomal_L1; 1.
DR PIRSF; PIRSF002155; Ribosomal_L1; 1.
DR SUPFAM; SSF56808; SSF56808; 1.
DR PROSITE; PS01199; RIBOSOMAL_L1; 1.
PE 1: Evidence at protein level;
KW Reference proteome; Ribonucleoprotein; Ribosomal protein.
FT CHAIN 1..217
FT /note="60S ribosomal protein L10a-3"
FT /id="PRO_0000125834"
FT CONFLICT 50
FT /note="S -> A (in Ref. 4; CAA23376)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 217 AA; 24532 MW; C72C49CCB6BAD320 CRC64;
MSKLQSEAVR EAISSIITHC KETKPRNFTE TIELQIGLKN YDPQKDKRFS GSVKLPHVPR
PKMKICMLGD AQHVEEAEKI GLESMDVEAL KKLNKNKKLV KKLAKKFHAF LASESVIKQI
PRLLGPGLNK AGKFPTLVSH QESLESKVNE TKATVKFQLK KVLCMGVAVG NLSMEEKQIF
QNVQMSVNFL VSLLKKNWQN VRCLYLKSTM GPPNRVF
