R15A1_ARATH
ID R15A1_ARATH Reviewed; 130 AA.
AC P42798; Q7GD83;
DT 01-NOV-1995, integrated into UniProtKB/Swiss-Prot.
DT 23-JAN-2007, sequence version 2.
DT 25-MAY-2022, entry version 154.
DE RecName: Full=40S ribosomal protein S15a-1;
GN Name=RPS15AA; OrderedLocusNames=At1g07770; ORFNames=F24B9.12;
GN and
GN Name=RPS15AF; OrderedLocusNames=At5g59850; ORFNames=MMN10.16, MMN10.8;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] (AT1G07770).
RC STRAIN=cv. Columbia;
RX PubMed=7972526; DOI=10.1104/pp.106.1.401;
RA Bonham-Smith P.C., Moloney M.M.;
RT "Nucleotide and protein sequences of a cytoplasmic ribosomal protein S15a
RT gene from Arabidopsis thaliana.";
RL Plant Physiol. 106:401-402(1994).
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA] (AT1G07770).
RC STRAIN=cv. Columbia;
RA Chen Z., Bonham-Smith P.C.;
RT "Arabidopsis thaliana cDNA for cytoplasmic ribosomal protein S15a.";
RL Submitted (JUN-1997) to the EMBL/GenBank/DDBJ databases.
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA] (AT1G07770).
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA] (AT5G59850).
RC STRAIN=cv. Columbia;
RX PubMed=9872454; DOI=10.1093/dnares/5.5.297;
RA Nakamura Y., Sato S., Asamizu E., Kaneko T., Kotani H., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. VII. Sequence
RT features of the regions of 1,013,767 bp covered by sixteen physically
RT assigned P1 and TAC clones.";
RL DNA Res. 5:297-308(1998).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (AT1G07770 AND AT5G59850).
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [7]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (AT1G07770 AND AT5G59850).
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [8]
RP GENE FAMILY ORGANIZATION, AND NOMENCLATURE.
RX PubMed=11598216; DOI=10.1104/pp.010265;
RA Barakat A., Szick-Miranda K., Chang I.-F., Guyot R., Blanc G., Cooke R.,
RA Delseny M., Bailey-Serres J.;
RT "The organization of cytoplasmic ribosomal protein genes in the Arabidopsis
RT genome.";
RL Plant Physiol. 127:398-415(2001).
CC -!- SUBCELLULAR LOCATION: Cytoplasm.
CC -!- SIMILARITY: Belongs to the universal ribosomal protein uS8 family.
CC {ECO:0000305}.
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DR EMBL; L27461; AAA61608.1; -; Genomic_DNA.
DR EMBL; AF001412; AAB58750.1; -; mRNA.
DR EMBL; AC007583; AAF75076.1; -; Genomic_DNA.
DR EMBL; AB015475; BAB08353.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE28177.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE28178.1; -; Genomic_DNA.
DR EMBL; CP002684; ANM58067.1; -; Genomic_DNA.
DR EMBL; CP002688; AED97242.1; -; Genomic_DNA.
DR EMBL; AF332447; AAG48810.1; -; mRNA.
DR EMBL; AF360284; AAK25994.1; -; mRNA.
DR EMBL; AF386922; AAK62367.1; -; mRNA.
DR EMBL; AY042830; AAK68770.1; -; mRNA.
DR EMBL; AY051040; AAK93717.1; -; mRNA.
DR EMBL; AY081472; AAM10034.1; -; mRNA.
DR EMBL; AY081689; AAM10251.1; -; mRNA.
DR EMBL; AY035157; AAK59661.1; -; mRNA.
DR EMBL; AY063028; AAL34202.1; -; mRNA.
DR EMBL; BT000671; AAN31818.1; -; mRNA.
DR EMBL; AY088335; AAM65874.1; -; mRNA.
DR EMBL; AY087576; AAM65118.1; -; mRNA.
DR PIR; B86213; B86213.
DR RefSeq; NP_001318947.1; NM_001331728.1.
DR RefSeq; NP_172256.1; NM_100651.5.
DR RefSeq; NP_200793.1; NM_125378.4.
DR RefSeq; NP_973783.1; NM_202054.3.
DR AlphaFoldDB; P42798; -.
DR SMR; P42798; -.
DR BioGRID; 21351; 150.
DR BioGRID; 22532; 154.
DR IntAct; P42798; 1.
DR STRING; 3702.AT1G07770.1; -.
DR PaxDb; P42798; -.
DR PRIDE; P42798; -.
DR ProteomicsDB; 236480; -.
DR EnsemblPlants; AT1G07770.1; AT1G07770.1; AT1G07770.
DR EnsemblPlants; AT1G07770.2; AT1G07770.2; AT1G07770.
DR EnsemblPlants; AT1G07770.3; AT1G07770.3; AT1G07770.
DR EnsemblPlants; AT5G59850.1; AT5G59850.1; AT5G59850.
DR GeneID; 836107; -.
DR GeneID; 837291; -.
DR Gramene; AT1G07770.1; AT1G07770.1; AT1G07770.
DR Gramene; AT1G07770.2; AT1G07770.2; AT1G07770.
DR Gramene; AT1G07770.3; AT1G07770.3; AT1G07770.
DR Gramene; AT5G59850.1; AT5G59850.1; AT5G59850.
DR KEGG; ath:AT1G07770; -.
DR KEGG; ath:AT5G59850; -.
DR Araport; AT1G07770; -.
DR Araport; AT5G59850; -.
DR TAIR; locus:2026525; AT1G07770.
DR TAIR; locus:2168118; AT5G59850.
DR eggNOG; KOG1754; Eukaryota.
DR HOGENOM; CLU_098428_1_1_1; -.
DR InParanoid; P42798; -.
DR OMA; RIFFRTH; -.
DR OrthoDB; 1417658at2759; -.
DR PhylomeDB; P42798; -.
DR PRO; PR:P42798; -.
DR Proteomes; UP000006548; Chromosome 1.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; P42798; baseline and differential.
DR Genevisible; P42798; AT.
DR GO; GO:0022626; C:cytosolic ribosome; HDA:TAIR.
DR GO; GO:0022627; C:cytosolic small ribosomal subunit; HDA:TAIR.
DR GO; GO:0009505; C:plant-type cell wall; HDA:TAIR.
DR GO; GO:0000325; C:plant-type vacuole; HDA:TAIR.
DR GO; GO:0009506; C:plasmodesma; HDA:TAIR.
DR GO; GO:0042788; C:polysomal ribosome; IDA:CAFA.
DR GO; GO:0003735; F:structural constituent of ribosome; IDA:CAFA.
DR GO; GO:0006412; P:translation; IEA:InterPro.
DR HAMAP; MF_01302_A; Ribosomal_S8_A; 1.
DR InterPro; IPR000630; Ribosomal_S8.
DR InterPro; IPR035987; Ribosomal_S8_sf.
DR PANTHER; PTHR11758; PTHR11758; 1.
DR Pfam; PF00410; Ribosomal_S8; 1.
DR SUPFAM; SSF56047; SSF56047; 1.
DR PROSITE; PS00053; RIBOSOMAL_S8; 1.
PE 2: Evidence at transcript level;
KW Cytoplasm; Reference proteome; Ribonucleoprotein; Ribosomal protein.
FT CHAIN 1..130
FT /note="40S ribosomal protein S15a-1"
FT /id="PRO_0000126612"
SQ SEQUENCE 130 AA; 14804 MW; 1CCA1A23525507C7 CRC64;
MVRISVLNDA LKSMYNAEKR GKRQVMIRPS SKVIIKFLIV MQKHGYIGEF EYVDDHRSGK
IVVELNGRLN KCGVISPRFD VGVKEIEGWT ARLLPSRQFG YIVLTTSAGI MDHEEARRKN
VGGKVLGFFY
