R18A2_ARATH
ID R18A2_ARATH Reviewed; 178 AA.
AC P51418; O64699;
DT 01-OCT-1996, integrated into UniProtKB/Swiss-Prot.
DT 06-JUN-2002, sequence version 2.
DT 25-MAY-2022, entry version 130.
DE RecName: Full=60S ribosomal protein L18a-2;
GN Name=RPL18AB; OrderedLocusNames=At2g34480; ORFNames=T31E10.18;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 69-160.
RC STRAIN=cv. Columbia;
RX PubMed=8281187; DOI=10.1046/j.1365-313x.1993.04061051.x;
RA Hoefte H., Desprez T., Amselem J., Chiapello H., Rouze P., Caboche M.,
RA Moisan A., Jourjon M.-F., Charpenteau J.-L., Berthomieu P., Guerrier D.,
RA Giraudat J., Quigley F., Thomas F., Yu D.-Y., Mache R., Raynal M.,
RA Cooke R., Grellet F., Delseny M., Parmentier Y., de Marcillac G., Gigot C.,
RA Fleck J., Philipps G., Axelos M., Bardet C., Tremousaygue D., Lescure B.;
RT "An inventory of 1152 expressed sequence tags obtained by partial
RT sequencing of cDNAs from Arabidopsis thaliana.";
RL Plant J. 4:1051-1061(1993).
RN [5]
RP GENE FAMILY ORGANIZATION, AND NOMENCLATURE.
RX PubMed=11598216; DOI=10.1104/pp.010265;
RA Barakat A., Szick-Miranda K., Chang I.-F., Guyot R., Blanc G., Cooke R.,
RA Delseny M., Bailey-Serres J.;
RT "The organization of cytoplasmic ribosomal protein genes in the Arabidopsis
RT genome.";
RL Plant Physiol. 127:398-415(2001).
RN [6]
RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RC STRAIN=cv. Landsberg erecta;
RX PubMed=17272265; DOI=10.1074/mcp.m600408-mcp200;
RA Maor R., Jones A., Nuehse T.S., Studholme D.J., Peck S.C., Shirasu K.;
RT "Multidimensional protein identification technology (MudPIT) analysis of
RT ubiquitinated proteins in plants.";
RL Mol. Cell. Proteomics 6:601-610(2007).
CC -!- SIMILARITY: Belongs to the eukaryotic ribosomal protein eL20 family.
CC {ECO:0000305}.
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DR EMBL; AC004077; AAC26708.1; -; Genomic_DNA.
DR EMBL; AC004481; AAM14956.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC08980.1; -; Genomic_DNA.
DR EMBL; AY042803; AAK68743.1; -; mRNA.
DR EMBL; AY120778; AAM53336.1; -; mRNA.
DR EMBL; BT000076; AAN15395.1; -; mRNA.
DR EMBL; BT006559; AAP21367.1; -; mRNA.
DR EMBL; Z18039; CAA79087.1; -; mRNA.
DR PIR; T02335; T02335.
DR RefSeq; NP_180995.1; NM_129000.4.
DR AlphaFoldDB; P51418; -.
DR SMR; P51418; -.
DR BioGRID; 3358; 44.
DR IntAct; P51418; 1.
DR STRING; 3702.AT2G34480.1; -.
DR MetOSite; P51418; -.
DR PaxDb; P51418; -.
DR PRIDE; P51418; -.
DR EnsemblPlants; AT2G34480.1; AT2G34480.1; AT2G34480.
DR GeneID; 818011; -.
DR Gramene; AT2G34480.1; AT2G34480.1; AT2G34480.
DR KEGG; ath:AT2G34480; -.
DR Araport; AT2G34480; -.
DR TAIR; locus:2040914; AT2G34480.
DR eggNOG; KOG0829; Eukaryota.
DR HOGENOM; CLU_080773_1_1_1; -.
DR InParanoid; P51418; -.
DR PhylomeDB; P51418; -.
DR PRO; PR:P51418; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; P51418; baseline and differential.
DR Genevisible; P51418; AT.
DR GO; GO:0022625; C:cytosolic large ribosomal subunit; HDA:TAIR.
DR GO; GO:0022626; C:cytosolic ribosome; HDA:TAIR.
DR GO; GO:0005783; C:endoplasmic reticulum; HDA:TAIR.
DR GO; GO:0005634; C:nucleus; IDA:TAIR.
DR GO; GO:0000325; C:plant-type vacuole; HDA:TAIR.
DR GO; GO:0042788; C:polysomal ribosome; IDA:CAFA.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR GO; GO:0003735; F:structural constituent of ribosome; IDA:CAFA.
DR GO; GO:0009793; P:embryo development ending in seed dormancy; IMP:TAIR.
DR GO; GO:0009860; P:pollen tube growth; IMP:TAIR.
DR GO; GO:0006412; P:translation; IEA:InterPro.
DR HAMAP; MF_00273; Ribosomal_L18Ae; 1.
DR InterPro; IPR028877; 50S_L18Ae/Ribosomal_L18a/L20.
DR InterPro; IPR023573; Ribosomal_L18a//L18Ae/LX.
DR InterPro; IPR021138; Ribosomal_L18a/L20_eukaryotes.
DR PANTHER; PTHR10052; PTHR10052; 2.
DR Pfam; PF01775; Ribosomal_L18A; 1.
DR PIRSF; PIRSF002190; Ribosomal_L18a; 1.
PE 1: Evidence at protein level;
KW Reference proteome; Ribonucleoprotein; Ribosomal protein.
FT CHAIN 1..178
FT /note="60S ribosomal protein L18a-2"
FT /id="PRO_0000213934"
FT CONFLICT 158..160
FT /note="VRP -> LDH (in Ref. 4)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 178 AA; 21307 MW; 1F409C9B3C3F27ED CRC64;
MGAFRFHQYQ VVGRALPTEK DVQPKIYRMK LWATNEVRAK SKFWYFLRKL KKVKKSNGQM
LAINEIYEKN PTTIKNFGIW LRYQSRTGYH NMYKEYRDTT LNGAVEQMYT EMASRHRVRF
PCIQIIKTAT VPAKLCKRES TKQFHNSKIK FPLVFRKVRP PSRKLKTTYK ANKPNLFM
