R18AL_ARATH
ID R18AL_ARATH Reviewed; 158 AA.
AC Q8L9S1; Q9C8S2;
DT 27-JUN-2006, integrated into UniProtKB/Swiss-Prot.
DT 27-JUN-2006, sequence version 2.
DT 25-MAY-2022, entry version 102.
DE RecName: Full=60S ribosomal protein L18a-like protein;
GN OrderedLocusNames=At1g29970; ORFNames=T1P2.8;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP GENE FAMILY ORGANIZATION, AND NOMENCLATURE.
RX PubMed=11598216; DOI=10.1104/pp.010265;
RA Barakat A., Szick-Miranda K., Chang I.-F., Guyot R., Blanc G., Cooke R.,
RA Delseny M., Bailey-Serres J.;
RT "The organization of cytoplasmic ribosomal protein genes in the Arabidopsis
RT genome.";
RL Plant Physiol. 127:398-415(2001).
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=1;
CC Comment=A number of isoforms are produced. According to EST
CC sequences.;
CC Name=1;
CC IsoId=Q8L9S1-1; Sequence=Displayed;
CC -!- SIMILARITY: Belongs to the eukaryotic ribosomal protein eL20 family.
CC {ECO:0000305}.
CC -!- CAUTION: Probable non-functional duplication of the RPL18AA gene.
CC {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAG52055.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AC022455; AAG52055.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE31160.1; -; Genomic_DNA.
DR EMBL; AY088264; AAM65804.1; -; mRNA.
DR PIR; E86423; E86423.
DR RefSeq; NP_564343.1; NM_102737.3. [Q8L9S1-1]
DR AlphaFoldDB; Q8L9S1; -.
DR BioGRID; 25111; 37.
DR EnsemblPlants; AT1G29970.1; AT1G29970.1; AT1G29970. [Q8L9S1-1]
DR GeneID; 839876; -.
DR Gramene; AT1G29970.1; AT1G29970.1; AT1G29970. [Q8L9S1-1]
DR KEGG; ath:AT1G29970; -.
DR Araport; AT1G29970; -.
DR InParanoid; Q8L9S1; -.
DR PhylomeDB; Q8L9S1; -.
DR PRO; PR:Q8L9S1; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q8L9S1; baseline and differential.
DR Genevisible; Q8L9S1; AT.
DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW.
DR InterPro; IPR044804; AT1G29970-like.
DR PANTHER; PTHR46631; PTHR46631; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; Reference proteome; Ribonucleoprotein;
KW Ribosomal protein.
FT CHAIN 1..158
FT /note="60S ribosomal protein L18a-like protein"
FT /id="PRO_0000240521"
FT CONFLICT 34
FT /note="T -> A (in Ref. 3; AAM65804)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 158 AA; 17473 MW; A4D35B24BCD765FE CRC64;
MDEEAAKPRD STVNQQHQYY YGTFQGVANF PTPTPPPQFM QPQHPITTFP GHAYQNLQGH
GGGVNYAQGF PVVVPDYTVV EVRPMIEHEL PCCGLGMGWF LFIMGFLFGG IPWYLGAFIV
LVTSVDHREK AGYVACSIAS VVYLIAVMLG MTGDINIW
