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R1AB_BRV1
ID   R1AB_BRV1               Reviewed;        6733 AA.
AC   P0C6V8; Q3T8J1; Q3T8J2; Q9YP98;
DT   10-JUN-2008, integrated into UniProtKB/Swiss-Prot.
DT   10-JUN-2008, sequence version 1.
DT   03-AUG-2022, entry version 84.
DE   RecName: Full=Replicase polyprotein 1ab;
DE            Short=pp1ab;
DE   AltName: Full=ORF1ab polyprotein;
DE   Contains:
DE     RecName: Full=Non-structural protein 1;
DE              Short=nsp1;
DE              EC=3.4.22.-;
DE     AltName: Full=Papain-like proteinase;
DE              Short=PL-PRO;
DE   Contains:
DE     RecName: Full=Non-structural protein 2;
DE              Short=nsp2;
DE   Contains:
DE     RecName: Full=3C-like serine proteinase;
DE              Short=3CLSP;
DE              EC=3.4.21.-;
DE     AltName: Full=M-PRO;
DE     AltName: Full=nsp3;
DE     AltName: Full=p27;
DE   Contains:
DE     RecName: Full=Non-structural protein 4;
DE              Short=nsp4;
DE   Contains:
DE     RecName: Full=Non-structural protein 5;
DE              Short=nsp5;
DE   Contains:
DE     RecName: Full=Non-structural protein 6;
DE              Short=nsp6;
DE   Contains:
DE     RecName: Full=Non-structural protein 7;
DE              Short=nsp7;
DE   Contains:
DE     RecName: Full=Non-structural protein 8;
DE              Short=nsp8;
DE   Contains:
DE     RecName: Full=RNA-directed RNA polymerase;
DE              Short=Pol;
DE              Short=RdRp;
DE              EC=2.7.7.48;
DE     AltName: Full=nsp10;
DE     AltName: Full=p100;
DE   Contains:
DE     RecName: Full=Helicase;
DE              Short=Hel;
DE              EC=3.6.4.12;
DE              EC=3.6.4.13;
DE     AltName: Full=nsp11;
DE     AltName: Full=p67;
DE   Contains:
DE     RecName: Full=Exoribonuclease;
DE              Short=ExoN;
DE              EC=3.1.13.-;
DE     AltName: Full=nsp12;
DE   Contains:
DE     RecName: Full=Non-structural protein 13;
DE              Short=nsp13;
DE   Contains:
DE     RecName: Full=Uridylate-specific endoribonuclease;
DE              EC=3.1.-.-;
DE     AltName: Full=NendoU;
DE     AltName: Full=nsp14;
DE   Contains:
DE     RecName: Full=Putative 2'-O-methyl transferase;
DE              EC=2.1.1.-;
DE     AltName: Full=nsp15;
GN   Name=rep; ORFNames=1a-1b;
OS   Breda virus 1 (BRV-1).
OC   Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
OC   Nidovirales; Tornidovirineae; Tobaniviridae; Torovirinae; Torovirus;
OC   Renitovirus.
OX   NCBI_TaxID=360393;
OH   NCBI_TaxID=9913; Bos taurus (Bovine).
RN   [1]
RP   NUCLEOTIDE SEQUENCE [GENOMIC RNA].
RX   PubMed=16137782; DOI=10.1016/j.virusres.2005.07.005;
RA   Draker R., Roper R.L., Petric M., Tellier R.;
RT   "The complete sequence of the bovine torovirus genome.";
RL   Virus Res. 115:56-68(2006).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [MRNA] OF 6380-6639.
RC   STRAIN=GC32;
RA   Gu M., Petric M.;
RL   Submitted (MAR-1996) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: The 3C-like serine proteinase is responsible for the majority
CC       of cleavages. {ECO:0000250}.
CC   -!- FUNCTION: The helicase which contains a zinc finger structure displays
CC       RNA and DNA duplex-unwinding activities with 5' to 3' polarity.
CC       {ECO:0000250}.
CC   -!- FUNCTION: The exoribonuclease acts on both ssRNA and dsRNA in a 3' to
CC       5' direction. {ECO:0000250}.
CC   -!- FUNCTION: NendoU is a Mn(2+)-dependent, uridylate-specific enzyme,
CC       which leaves 2'-3'-cyclic phosphates 5' to the cleaved bond.
CC       {ECO:0000250}.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate +
CC         RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:14527, Rhea:RHEA-
CC         COMP:17342, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557, ChEBI:CHEBI:140395;
CC         EC=2.7.7.48; Evidence={ECO:0000255|PROSITE-ProRule:PRU00539};
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=ATP + H2O = ADP + H(+) + phosphate; Xref=Rhea:RHEA:13065,
CC         ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616,
CC         ChEBI:CHEBI:43474, ChEBI:CHEBI:456216; EC=3.6.4.12;
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=ATP + H2O = ADP + H(+) + phosphate; Xref=Rhea:RHEA:13065,
CC         ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616,
CC         ChEBI:CHEBI:43474, ChEBI:CHEBI:456216; EC=3.6.4.13;
CC   -!- SUBCELLULAR LOCATION: [Non-structural protein 1]: Host membrane
CC       {ECO:0000305}; Multi-pass membrane protein {ECO:0000305}.
CC   -!- SUBCELLULAR LOCATION: [Non-structural protein 2]: Host membrane
CC       {ECO:0000305}; Multi-pass membrane protein {ECO:0000305}.
CC   -!- SUBCELLULAR LOCATION: [Non-structural protein 4]: Host membrane
CC       {ECO:0000305}; Multi-pass membrane protein {ECO:0000305}.
CC   -!- ALTERNATIVE PRODUCTS:
CC       Event=Ribosomal frameshifting; Named isoforms=2;
CC       Name=Replicase polyprotein 1ab; Synonyms=pp1ab;
CC         IsoId=P0C6V8-1; Sequence=Displayed;
CC       Name=Replicase polyprotein 1a; Synonyms=pp1a, ORF1a polyprotein;
CC         IsoId=P0C6F4-1; Sequence=External;
CC   -!- DOMAIN: The hydrophobic domains (HD) could mediate the membrane
CC       association of the replication complex and thereby alter the
CC       architecture of the host cell membrane. {ECO:0000250}.
CC   -!- PTM: Specific enzymatic cleavages in vivo by its own protease yield
CC       mature proteins. 3CL-PRO is autocatalytically processed (By
CC       similarity). {ECO:0000250}.
CC   -!- MISCELLANEOUS: [Isoform Replicase polyprotein 1ab]: Produced by -1
CC       ribosomal frameshifting at the 1a-1b genes boundary.
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DR   EMBL; AY427798; AAS17963.1; -; Genomic_RNA.
DR   EMBL; U50390; AAD11480.1; -; mRNA.
DR   MEROPS; S65.001; -.
DR   PRIDE; P0C6V8; -.
DR   Proteomes; UP000000355; Genome.
DR   GO; GO:0033644; C:host cell membrane; IEA:UniProtKB-SubCell.
DR   GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR   GO; GO:0016887; F:ATP hydrolysis activity; IEA:RHEA.
DR   GO; GO:0008234; F:cysteine-type peptidase activity; IEA:UniProtKB-KW.
DR   GO; GO:0003678; F:DNA helicase activity; IEA:UniProtKB-EC.
DR   GO; GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.
DR   GO; GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.
DR   GO; GO:0008168; F:methyltransferase activity; IEA:UniProtKB-KW.
DR   GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR   GO; GO:0003724; F:RNA helicase activity; IEA:UniProtKB-EC.
DR   GO; GO:0003968; F:RNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-KW.
DR   GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR   GO; GO:0032259; P:methylation; IEA:UniProtKB-KW.
DR   GO; GO:0006508; P:proteolysis; IEA:UniProtKB-KW.
DR   GO; GO:0006351; P:transcription, DNA-templated; IEA:InterPro.
DR   GO; GO:0039694; P:viral RNA genome replication; IEA:InterPro.
DR   CDD; cd20762; capping_2-OMTase_Nidovirales; 1.
DR   CDD; cd21557; Macro_X_Nsp3-like; 1.
DR   CDD; cd21162; NendoU_tv_PToV-like; 1.
DR   CDD; cd21413; unc_tv_SF1_Hel-like; 1.
DR   CDD; cd21403; ZBD_tv_SF1_Hel-like; 1.
DR   Gene3D; 3.40.220.10; -; 1.
DR   Gene3D; 3.40.50.150; -; 1.
DR   Gene3D; 3.40.50.300; -; 2.
DR   InterPro; IPR027351; (+)RNA_virus_helicase_core_dom.
DR   InterPro; IPR009097; Cyclic_Pdiesterase.
DR   InterPro; IPR043502; DNA/RNA_pol_sf.
DR   InterPro; IPR037227; EndoU-like.
DR   InterPro; IPR002589; Macro_dom.
DR   InterPro; IPR043472; Macro_dom-like.
DR   InterPro; IPR044371; Macro_X_NSP3-like.
DR   InterPro; IPR043609; NendoU_nidovirus.
DR   InterPro; IPR044397; NendoU_PToV-like.
DR   InterPro; IPR044863; NIRAN.
DR   InterPro; IPR039573; NS2A-like.
DR   InterPro; IPR027352; NSP13_ZBD_CoV-like.
DR   InterPro; IPR009461; NSP16_CoV-like.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR038765; Papain-like_cys_pep_sf.
DR   InterPro; IPR009003; Peptidase_S1_PA.
DR   InterPro; IPR001205; RNA-dir_pol_C.
DR   InterPro; IPR007094; RNA-dir_pol_PSvirus.
DR   InterPro; IPR029063; SAM-dependent_MTases_sf.
DR   InterPro; IPR044355; SF1_Hel_unc_tv.
DR   InterPro; IPR044336; SF1_Hel_ZBD_tv.
DR   Pfam; PF05213; Corona_NS2A; 1.
DR   Pfam; PF19215; CoV_NSP15_C; 1.
DR   Pfam; PF01661; Macro; 1.
DR   Pfam; PF00680; RdRP_1; 1.
DR   SMART; SM00506; A1pp; 1.
DR   SUPFAM; SSF142877; SSF142877; 1.
DR   SUPFAM; SSF50494; SSF50494; 1.
DR   SUPFAM; SSF52540; SSF52540; 1.
DR   SUPFAM; SSF52949; SSF52949; 1.
DR   SUPFAM; SSF54001; SSF54001; 1.
DR   SUPFAM; SSF55144; SSF55144; 1.
DR   SUPFAM; SSF56672; SSF56672; 1.
DR   PROSITE; PS51653; CV_ZBD; 1.
DR   PROSITE; PS51154; MACRO; 1.
DR   PROSITE; PS51958; NENDOU; 1.
DR   PROSITE; PS51947; NIRAN; 1.
DR   PROSITE; PS51955; NIV_2_O_MTASE; 1.
DR   PROSITE; PS51953; NIV_EXON; 1.
DR   PROSITE; PS51657; PSRV_HELICASE; 1.
DR   PROSITE; PS50507; RDRP_SSRNA_POS; 1.
PE   2: Evidence at transcript level;
KW   ATP-binding; Endonuclease; Exonuclease; Helicase; Host membrane; Hydrolase;
KW   Membrane; Metal-binding; Methyltransferase; Nuclease; Nucleotide-binding;
KW   Nucleotidyltransferase; Protease; Reference proteome; Repeat;
KW   Ribosomal frameshifting; RNA-directed RNA polymerase; Thiol protease;
KW   Transferase; Transmembrane; Transmembrane helix; Viral RNA replication;
KW   Zinc; Zinc-finger.
FT   CHAIN           1..2753
FT                   /note="Non-structural protein 1"
FT                   /evidence="ECO:0000255"
FT                   /id="PRO_0000283859"
FT   CHAIN           2754..3131
FT                   /note="Non-structural protein 2"
FT                   /evidence="ECO:0000255"
FT                   /id="PRO_0000283860"
FT   CHAIN           3132..3418
FT                   /note="3C-like serine proteinase"
FT                   /evidence="ECO:0000250"
FT                   /id="PRO_0000283862"
FT   CHAIN           3419..3677
FT                   /note="Non-structural protein 4"
FT                   /evidence="ECO:0000255"
FT                   /id="PRO_0000283863"
FT   CHAIN           3678..3854
FT                   /note="Non-structural protein 5"
FT                   /evidence="ECO:0000255"
FT                   /id="PRO_0000283864"
FT   CHAIN           3855..4036
FT                   /note="Non-structural protein 6"
FT                   /evidence="ECO:0000255"
FT                   /id="PRO_0000283865"
FT   CHAIN           4037..4121
FT                   /note="Non-structural protein 7"
FT                   /evidence="ECO:0000255"
FT                   /id="PRO_0000283866"
FT   CHAIN           4122..4274
FT                   /note="Non-structural protein 8"
FT                   /evidence="ECO:0000255"
FT                   /id="PRO_0000283867"
FT   CHAIN           4275..5286
FT                   /note="RNA-directed RNA polymerase"
FT                   /evidence="ECO:0000255"
FT                   /id="PRO_0000283868"
FT   CHAIN           5287..5844
FT                   /note="Helicase"
FT                   /evidence="ECO:0000255"
FT                   /id="PRO_0000283869"
FT   CHAIN           5845..6174
FT                   /note="Exoribonuclease"
FT                   /evidence="ECO:0000255"
FT                   /id="PRO_0000283870"
FT   CHAIN           6175..6318
FT                   /note="Non-structural protein 13"
FT                   /evidence="ECO:0000255"
FT                   /id="PRO_0000283871"
FT   CHAIN           6319..6468
FT                   /note="Uridylate-specific endoribonuclease"
FT                   /evidence="ECO:0000255"
FT                   /id="PRO_0000283872"
FT   CHAIN           6469..6733
FT                   /note="Putative 2'-O-methyl transferase"
FT                   /evidence="ECO:0000255"
FT                   /id="PRO_0000283873"
FT   TRANSMEM        2191..2211
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        2219..2239
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        2266..2286
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        2411..2431
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        2521..2541
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        2546..2566
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        2769..2789
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        2937..2957
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        2986..3006
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        3022..3042
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        3422..3442
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        3456..3478
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        3486..3506
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        3514..3534
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        3538..3558
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        3573..3593
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        3598..3613
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   DOMAIN          1633..1814
FT                   /note="Macro"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00490"
FT   DOMAIN          1821..1969
FT                   /note="Peptidase C28"
FT   DOMAIN          4442..4673
FT                   /note="NiRAN"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01292"
FT   DOMAIN          4981..5132
FT                   /note="RdRp catalytic"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00539"
FT   DOMAIN          5287..5368
FT                   /note="CV ZBD"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00986"
FT   DOMAIN          5509..5688
FT                   /note="(+)RNA virus helicase ATP-binding"
FT   DOMAIN          5689..5848
FT                   /note="(+)RNA virus helicase C-terminal"
FT   DOMAIN          5846..6059
FT                   /note="ExoN"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01298"
FT   DOMAIN          6327..6467
FT                   /note="NendoU"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01303"
FT   DOMAIN          6469..6733
FT                   /note="Nidovirus-type SAM-dependent 2'-O-MTase"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01300"
FT   REGION          2183..2565
FT                   /note="HD1"
FT                   /evidence="ECO:0000250"
FT   REGION          2769..3042
FT                   /note="HD2"
FT                   /evidence="ECO:0000250"
FT   REGION          3430..3613
FT                   /note="HD3"
FT                   /evidence="ECO:0000250"
FT   ACT_SITE        3184
FT                   /note="Charge relay system; for 3C-like serine proteinase
FT                   activity"
FT                   /evidence="ECO:0000255"
FT   ACT_SITE        3222
FT                   /note="Charge relay system; for 3C-like serine proteinase
FT                   activity"
FT                   /evidence="ECO:0000255"
FT   ACT_SITE        3291
FT                   /note="Charge relay system; for 3C-like serine proteinase
FT                   activity"
FT                   /evidence="ECO:0000255"
FT   ACT_SITE        5860
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01298"
FT   ACT_SITE        5862
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01298"
FT   ACT_SITE        5961
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01298"
FT   ACT_SITE        6037
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01298"
FT   ACT_SITE        6042
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01298"
FT   ACT_SITE        6363
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01303"
FT   ACT_SITE        6380
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01303"
FT   ACT_SITE        6412
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01303"
FT   ACT_SITE        6509
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01300"
FT   ACT_SITE        6585
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01300"
FT   ACT_SITE        6613
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01300"
FT   ACT_SITE        6647
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01300"
FT   BINDING         5293
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="1"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00986"
FT   BINDING         5296
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="1"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00986"
FT   BINDING         5304
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="2"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00986"
FT   BINDING         5307
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="1"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00986"
FT   BINDING         5314
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="1"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00986"
FT   BINDING         5317
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="2"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00986"
FT   BINDING         5321
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="2"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00986"
FT   BINDING         5327
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="2"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00986"
FT   BINDING         5336
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="3"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00986"
FT   BINDING         5338
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="3"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00986"
FT   BINDING         5355
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="3"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00986"
FT   BINDING         5359
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="3"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00986"
FT   BINDING         6025
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="4"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01298"
FT   BINDING         6029
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="4"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01298"
FT   BINDING         6033
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="4"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01298"
FT   BINDING         6048
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="4"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01298"
FT   SITE            2753..2754
FT                   /note="Cleavage; by 3C-like serine proteinase"
FT                   /evidence="ECO:0000255"
FT   SITE            3131..3132
FT                   /note="Cleavage; by 3C-like serine proteinase"
FT                   /evidence="ECO:0000250"
FT   SITE            3418..3419
FT                   /note="Cleavage; by 3C-like serine proteinase"
FT                   /evidence="ECO:0000250"
FT   SITE            3677..3678
FT                   /note="Cleavage; by 3C-like serine proteinase"
FT                   /evidence="ECO:0000255"
FT   SITE            3854..3855
FT                   /note="Cleavage; by 3C-like serine proteinase"
FT                   /evidence="ECO:0000255"
FT   SITE            4036..4037
FT                   /note="Cleavage; by 3C-like serine proteinase"
FT                   /evidence="ECO:0000255"
FT   SITE            4121..4122
FT                   /note="Cleavage; by 3C-like serine proteinase"
FT                   /evidence="ECO:0000255"
FT   SITE            4274..4275
FT                   /note="Cleavage; by 3C-like serine proteinase"
FT                   /evidence="ECO:0000255"
FT   SITE            5286..5287
FT                   /note="Cleavage; by 3C-like serine proteinase"
FT                   /evidence="ECO:0000255"
FT   SITE            5844..5845
FT                   /note="Cleavage; by 3C-like serine proteinase"
FT                   /evidence="ECO:0000255"
FT   SITE            6174..6175
FT                   /note="Cleavage; by 3C-like serine proteinase"
FT                   /evidence="ECO:0000255"
FT   SITE            6468..6469
FT                   /note="Cleavage; by 3C-like serine proteinase"
FT                   /evidence="ECO:0000255"
SQ   SEQUENCE   6733 AA;  765975 MW;  7947CE8F5F1FA90D CRC64;
     MSKTSRELTN ETELHLCSST LDLISKSQLL AQCLGTPQNL VSLSKMVPSI LESPTLEPRY
     TSTHSSSLQS LQLLALNTSS TLYKWTTGSI SKLRGHLERE LCRGLVPLND FIPKGNYVEL
     SLMIPSVLTG QGTSTTTTLQ EMCSDMVQSC IKSMETDLLK GVLALKDQTS CQEYFLSANY
     QSLIPPQPLV NAMRMSSVVD LSPLILENTR LLLKLSPFHG GTSVSYTSMI REFVDCSRRD
     EKCLKRRLTK KQKRQEEGSF DANKVITLGG KMYRYRVVIL KCSDEVDDLI GFDGKVGEFD
     YNFENVPHCW RDLVKRRCLI RAKATWNLAG GVDENLDHVY IDESQXDFRC ADGSSDSPSA
     CVEDPHLEER IFSRVWLKQT SRFFGTKIQQ VSELFKSIGL PELETTYCGV NPVKVGNKWL
     SFRDQGRSRV FFVYTDSNVY LATTRQKVCC DYILTKFKSV KWIGNKPDQC RVVKVLAWLI
     SVNKVKNCTR VITPMLTVQG KISHRRVDYL DISVLDSYVS DTAGLNCVQK VKKFLSMYYN
     CGADLGLLDN FLTPIECGTK QLVFERCNCP NHQFYVAQFD NHVVLGLGRP TGVVYPEEIP
     SCANIYAVGF ATQKRVVEVH YYSEMDRHQL PQDYYYFAYD QEFQHVGGDD YVNHHLDDVE
     DQPFPPVLFD DVYDSGDSLD DGGSDLDCFD VGYDFFWPEA PIPVPSPYGY YQGQRLRDLC
     VAGGDFGCDC PRCDGTFIYH PFRPRHYHSF DEVGPFIQMC EFTLTYSGQN YNLFYGLEPK
     VCLQDLVEAS DKLLQLLVRG QLENISLPND ILACLSSLKL GANIHPFLWP APFFNANGEW
     VDIFGGGDFT VFGEDFCLKA KSMVESVYFL VENFFSVDCP IGNLYCNLHL DGDVKKMLWS
     TIHMKYIYLA LIHSEKVFNI ILNSRQLSHQ ELVKLVIIGT FDVSIVAPCA CSGDCNHGKV
     YNWTNLLSSV YRFVTLDQLV GLSYCEKRSL VLRKVQQYLE VEEGYQRPVQ LLMAPFYGFN
     DNAEPDEQPL TGVFHQQVMQ MFDTCVMLDV ICGLKRPRAS VYNLFGVLAD YFRRPFTFRY
     YQVAEFSGSE STQVFTDVTS ALTSKDPCSN RPYIYHDYAV CRVVEPRTAA VTTRGAIYPP
     EVIEMIRSYL PIEFDVGVMN YVDGNCDFKY CNLEFCLSGR GLVKLDTGEL LDYKTNLFVV
     RYKTLPLLYV TSNPIYLSDF SLDNAVCLTG DFKLSFDVEP GSTLFGLYFT NGRCYRDVWE
     TLPRFGLGTL SPPKCHSKCE PFENLAEVFF FKRRVQLVPL VNNYTPVFRH RPDIPKVLTV
     ELMPYYSSIG YQGFVAPKCV LPGCVATQYC KLRHQLDRCV QVTKLAVAYA FYFKPLNIGS
     LYHLDPMRGT SYGKPAVVQF EPVGLIKEVN ILVYQFGKHV AIHYFPECPT YVAYGHYPSH
     SVGVWLGYLP SVEECVIAQR NYRVYVPTCF RLSRTGCYHI QQDEDFERTH ITVSYHYARD
     FDTKSLTPMF QMFSKIFGKS KQDLICALNS LSEESQSVLT LFCEEFDSAY TLQTISDEVS
     FETSTSPELV ACVLAYAIGY ELCLTVKTDG ECESLDVGSS LEQVYVDYDV SKNVWDLSTH
     LQDDSSDDLE LPFNQYYEFK VGRASVVLVQ DDFKSVYDFL KSEQGVDYVV NPANNQLKHG
     GGIAKVISCM CGPKLTSWSN NYIKQYKKLG VTCAIRSPGF QLGKGVQIIH VVGPKSADSD
     VVNKLEASWR SVFQNVKPDT TVLTSMLSTG IFGCSVTDSA TTLLSNLVDL DKDVVVFVVT
     NVSDQYIEAL GVVESFQSAH GLPNFGNTCW FNALYQLLKS FAVKEQIVQD LVNCFDDFYE
     CPTRQCVEWV CDQLGVVFGE QYDAVEMLVK IFDVFKCNVR VGYDCLARLQ QVALGSCREV
     PADAVLMFFG QDKSGHWVAA RKVCGVWYTF DDKVVVKKDP DWSKVVLVLR ERGLFKATDF
     ETPRPRRRRV AYRVPRDTIS QDAIMFLEER QFSSGTMLAH SCVESVESFH VEGVQPSPLQ
     SVDGLDDVAD LSCDNHVCDN SDLQEPQVVV SQPSEVLTTS MSIECPVLEN SECSVETDLN
     PVCEENEQVG ESGIKEQDGV TTSDSQQVFS KSLDPIIKQH EVESVEPQDL PVFSQQPQVM
     LSMTWRDVLF QQYLGFKSDL LSLTHVNKFK IVVYLMVLWF VLLYCFSDFS LLSRFCLYVF
     LLWLSHVVLV VKKLDLGLVN SGGESYVLRI LSSVKVPNCI AFNCDGVHWL ILKLLFYSFH
     FYDFFVKTLV VVFQMPQLRC FTWPLLKLGF ADTFLSHHIL AFPTKQVSQS CLPVFGDERK
     YIYVPYWCKE SFRTLVARAK QLTATGRTKT LDNWHYQCCS KTVKPSSCFN VRDFVFDDAC
     NNHKHYGFFS ALWFYVVFYS GFVSFWLPLM FCYCALFMCT FKNLPVNITR PIRWTVLQQV
     VDDLLSIITK PLFGRPACPP LSAYLTATTA DEAVRASRSL LGRFCTPVGF QQPIMNVENG
     VAVSSLGFIN PLMWPLFIVV LLDNRFVWFF NVLSYIMLPV FVIILFYFYL RKICGCVNVK
     GVVKNCTRHF QNFSKPLVAA GVHGNRTNFT YQPMQENWCD RHSWYCPKEE HYMTPEMAMF
     IKNYYNLATS PMADTIWCDY VKSVPNMTWA NFKFSLFKSN ETVMCGPSSH ADSMLLSWYA
     FLHGIRFAVN PSVIDIPSQT QPIYVSSDSD DSLDKGCDVS LRPTKNKGKF KKQSVAYFSA
     GPVDLWYYVM LIIALGAIFV FMYSCFMVGQ YVVMPRDKFF GVNPTGYSYV NAQPYLHASP
     PVLRNSDGMV LATPLKVPSI SYSVYRLLSG HLYFTKLIVA ENECTPPFGA XRLSHEFTCN
     DFTYILPAHL RIFGRYIMLI HPDQLHMLPF EVEHSTHTRL CYVTGTNIVE CLPTFEIISP
     YVFVVLVAIF TIVFLFLLRM YIVMYSYFKV FTYVVFKLLF VNTVMVLFVV CLPPLVPGVV
     FVLALWLCDS VVFLLYLAVL SLFILPWFYV MLFVLIVGGF VFWWMMKSSD VVHLTPDGLT
     FNGTFEQVSK CVFPLNPLIV NRLLLDCRMS HSDLVEKSKL KTTEGKLATE MMKVFMTGET
     AYYQPSNFSF QSVFSKVVSP FTLHARPPMP MFRLYVYFNG QCVGTTCTGT GFAIDDSTIV
     TAKHLFECDD LKPTHLSVEL SCRSYWCTWK EPNVLSWKFE GENAYISVEN LRDFYGIDFK
     YLPFQQIECE FYKRMEAVTI YSIKYGSEFA TQAWQTVNGH FVCCNTEGGD SGAPLVWRDS
     VIGVHQGLCD SFKTTLASDS KGVMMTEVKG YHVDPPVYYK PIIMSAAYNK FVADSDVSVG
     ECTNYHNFVN EDFFSMHDEL EKVSFGDKMF RYCQSLPRYL EPLHYFHVPS FWQPFKKQSV
     SSNVSWVVEN LHFIFSVYFL VCDFVAYWWL DDPFSVVLPL FFVVQLLSTV VLKNVLFWNT
     SYLVTLAVTF YVHSEVAESM YLLGLFSDQI VNRVGLILVV SVMCLFVVVR VVVNVKRAIF
     VVVVSVLLIV VNVVLGVVQF NSLVAVCMFD IYAVFAALLT PQPVVAIMML ILFDTKCLMS
     FAFVVIVLSF RVFKNYKFVR VLHNLCNFDF VLTQLSLFRY RHHNQGNNPS HYEALWLFLK
     ELYYGVQDVK YEVFSPQAGT YNVRFLTDMT EQDQLEAVEQ VQRRLQRFSI VQDKNSQRLV
     LYSKNVDFLR SQIQHQRVLG ANPFIITTLT PKDIAIDNVE VHNPSQFKPE DLQAHMWFYS
     KSPIFVGQVP IPTNVQTAAV LDTTYNCQDL TADEKNNVAA NLQIQNAALT LSLFEECNRF
     LESELGDVPT LMWQSEDVVD VKQLEVQIEK LRVVLDGMQL GTSEYKATRK QINILQSQLD
     KALAFERKLA KFLEKVDQQQ AITNETAKQL SAFKNLVKQV YESYMSSLKV RVVESNDASC
     LLTSTDLPRK LVLMRPITGL DNIKIVEKAN GCEITAFGDT FTTGLGSNLA GLAYSSTQPL
     SAYPFIFNLE GIFKQQANIG YKTVECNMSS DNGSVLYKGK IVAVPSEDNP DFVVCGKGYK
     LDCGINVLMI PSIVRYITLN LTDHLQRQSL KPRRRLQYKQ QGVRLGGVNL GEHQAFSNEL
     ISSVGYTTWV SSTVCTDKSH KHPWFVQIPS SEKDPEWFMH NTQVKNNQWV VDAKPTHWLV
     DADTNEQLFA LALTDEEYLK AESILAKWSP ITQDVECWFK DLRGYYTVSG LQPLWPVCPK
     KICSLKIVPI FQSQSVAYAD EPTHFLSLPV VNKNFLEAFY ELQEGFPGEK QVAPHISLTM
     LKLTEEDVAK VEDILDEMVL PNTYATITNP HMMGQYYVFE VEGLQALHDE VVSVLRQHGI
     ACDQTRMWKP HLTIGEIKDG SVFNKFKDFG ITCKLEDCDF VKLGAPKANA RYEFIATLPV
     GDFKLLRDVW CACRHLCFQN GAYQSSRSKH YIDLATEYNA GIVKVNKSNT HSVEYKGQRF
     MIKRVKDQHE FALARTAFLP SIIPHHMVHQ NGEWFLVRGP TTQWSLGDLV YAIWLGDQAY
     LDECGFVFNP SRDEFLDDAN QRSYLANLLE PAILSFCEIF HCVKGCQVPY KITLDNLDLK
     GQLYDFGDYP CPNKVDNQSA LFVLAEVWSM TRKPFPTKFA QVLAKEMNVP ADFQMYFQHT
     LLSGKYFDKA MCLNNVRPLL RDPANLTTTP FFSQHSGVWT HFYNPIYGLV ECDLEEFSNL
     PEVLQQLITV QGPITSAMTP AISIGEGVYA ANVPPVAAAK QKIPLYDVGL CQELTDAGVD
     CGEAFKYFYY LSNPAGALAD VCFYDYQGTG FYSPKLLAGV YDFMKRVTTC YKTDERFTYE
     QAKPRKSSMG INITGYQQDA VYRALGPENI TKLFEYAQKA PLPFCTKIIT KFALSAKARA
     RTVSSCSFIA STIFRFAHKP VTSKMVEVAQ NSQGFCLIGV SKYGLKFSKF LKDKYGAIEQ
     FDVFGSDYTK CDRTFPLSFR ALTAALLYEL GGWEEDSWLY LNEVNSYMLD TMLCDGMLLN
     KPGGTSSGDA TTAHSNTFYN YMVHYVVAFK TILSDLSDCN KVMRIAAHNA YTTGDYGVFN
     TLLEEQFQTN YFLNFLSDDS FIFSKPGALK IFTCENFSNK LQTILHTKVD LTKSWATTGH
     IEEFCSAHII KTDGEYHFLP SRGRLLASLL ILDKLSDVDI YYMRFVAILC ESAVYSRYQP
     EFFNGLFQVF LDKVQQFRKD YCCDPCPTQL LDRQFYENLV FTSNTEVGLV DCYLENFKLQ
     CEFKQQAGFD RVCFCCPNPA VSVCEECYVP LPLCAYCYYV HVVISSHCKI EDKFKCPCGQ
     DDIRELFIVL NNSICIYQCR SCVESDRLRI SLLSDVDQVV RLPGFKANSA SIAKNGVAQL
     LTPVDNVDVS LDWNHQETVQ QNVARIVYHS ANMTQMSIEV VYVNFSLVRN DGSSAILDIP
     NFKCPDTSYC LFYKPGKTGV LKFTGKGTLT SCYDSNNLTW FKVTCPDFNQ PWRLATCFVI
     QQHDAVYPPI KSTQYENVTF VMGPPGTGKT TFVYNTYLSK ASPSNRFVYC APTHRLVGDM
     DEKVDGAVVV SAYNDRTYRN PVWKKDDSYD VLLCTHNTLP FIKSAVLIVD EVSLIPPHVM
     IKILSMGFKK VVLLGDPFQL SPVYKNHKVH FKYDTFYLLQ LATQKRYLTA CYRCPPQILS
     AFSKPYCDVG VDLVSFNNKP GKFDIIVSKQ LANMQDFSVL SVLSKEYPGY VILVNYRAAV
     DYAMQNGLGD VTTIDSSQGT TAANHLLVLF GASNFSKTIN RVIVGCSRST THLVVVCCPE
     LYKHFQPILN WPEPVYRYFG MEKQSDFNII PEVASLVFCD IEFWHYKADP NSKTRTVYPG
     QIAVVTSQTL QLYLGVFDDA GYKSALRGLP KDVFVPPNWV WMRKHYPSFE QHAYNMQRLF
     KFIIDTTCGQ PWFILYSCSN DLKSLKFYVE FGTNYFCSCG ELAICLMRDG LYKCRNCYGN
     MSISKLVNCK YLDVQKERIK LQDAHDAICQ QFHGDSHEAL CDAVMTKCLY LASYDAAFKD
     TIHVKYKDLC LEIQYKITSP YVRYDGVNKR YLYRDHGAMH YFKTPKSPMQ NVYRYEVGAH
     TEYSINICNS YEGCQSFGKT CTKCIHIHCI VEQFMADDRY RDFILVSVVK SDFVEQALSP
     AAKALMLTVT RVEGKSFYTS NGQRYDLYDY DLSKSVMRVV GASVKPLPLY SVVVGLGINC
     TVGCVLPNVP MKLKDELLST DVPLSTLRLD LPTWYYVTWP TLSNRTSRWK LAGAQVYDCS
     VHIYVEATGE QPLYYLQLGN GESLRELPET LFSTGRLYNL EHDPSKNFNV QQLAIETIPK
     NHHVFAGDFT DVGTDIGGVH HVVALNGYKG SIIPNYVKPI ATGLINVGRS VKRTTLVDVC
     ANQLYEKVKQ QIAGVKVSKV IFVNIDFQEV QFMVFAKGED DIQTFYPQKE FIRSYYEWPT
     ILPELESHYD LKNYGQDPQF MPQPVNFAKY TQICTFIQEH VKVARNSLIW HVGAAGIDGC
     SPGDIVLSSF FKECLVYSWD VKDYDTLLEK HNYDCNFRPN LIVSDVYNVS SNVSEVLEDC
     VHRLALGGTI IFKTTESSRP DIQLSKVTKY FAAVHFFTAG VNTSSSEVFV VLKYKLHSEP
     IGEELCSPNI LRRIAAYRNK LCIVPNFKVF STSLSYRFSS VKFVQKCFYV SVPRQFCASG
     LIQEVPLLCQ MKH
 
 
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