R23A1_ARATH
ID R23A1_ARATH Reviewed; 154 AA.
AC Q8LD46; O48553; O80633;
DT 30-AUG-2005, integrated into UniProtKB/Swiss-Prot.
DT 30-AUG-2005, sequence version 2.
DT 25-MAY-2022, entry version 132.
DE RecName: Full=60S ribosomal protein L23a-1;
DE Short=AtRPL23A-1;
GN Name=RPL23AA; OrderedLocusNames=At2g39460; ORFNames=F12L6.12;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Columbia;
RA Bonham-Smith P.C.;
RL Submitted (NOV-1997) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [6]
RP FUNCTION.
RX PubMed=11575722; DOI=10.1023/a:1011612329398;
RA McIntosh K.B., Bonham-Smith P.C.;
RT "Establishment of Arabidopsis thaliana ribosomal protein RPL23A-1 as a
RT functional homologue of Saccharomyces cerevisiae ribosomal protein L25.";
RL Plant Mol. Biol. 46:673-682(2001).
RN [7]
RP GENE FAMILY ORGANIZATION, AND NOMENCLATURE.
RX PubMed=11598216; DOI=10.1104/pp.010265;
RA Barakat A., Szick-Miranda K., Chang I.-F., Guyot R., Blanc G., Cooke R.,
RA Delseny M., Bailey-Serres J.;
RT "The organization of cytoplasmic ribosomal protein genes in the Arabidopsis
RT genome.";
RL Plant Physiol. 127:398-415(2001).
CC -!- FUNCTION: Binds to a specific region on the 26S rRNA. {ECO:0000250,
CC ECO:0000269|PubMed:11575722}.
CC -!- SIMILARITY: Belongs to the universal ribosomal protein uL23 family.
CC {ECO:0000305}.
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DR EMBL; AF034694; AAB87692.1; -; mRNA.
DR EMBL; AC004218; AAC27837.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC09680.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC09681.1; -; Genomic_DNA.
DR EMBL; AF325056; AAG40408.1; -; mRNA.
DR EMBL; AY037235; AAK59835.1; -; mRNA.
DR EMBL; AY039850; AAK63954.1; -; mRNA.
DR EMBL; AY060540; AAL31171.1; -; mRNA.
DR EMBL; AY086212; AAM64290.1; -; mRNA.
DR PIR; T00556; T00556.
DR RefSeq; NP_001154565.1; NM_001161093.2.
DR RefSeq; NP_181478.1; NM_129504.4.
DR AlphaFoldDB; Q8LD46; -.
DR SMR; Q8LD46; -.
DR BioGRID; 3869; 146.
DR STRING; 3702.AT2G39460.2; -.
DR iPTMnet; Q8LD46; -.
DR MetOSite; Q8LD46; -.
DR PaxDb; Q8LD46; -.
DR PRIDE; Q8LD46; -.
DR EnsemblPlants; AT2G39460.1; AT2G39460.1; AT2G39460.
DR EnsemblPlants; AT2G39460.2; AT2G39460.2; AT2G39460.
DR GeneID; 818531; -.
DR Gramene; AT2G39460.1; AT2G39460.1; AT2G39460.
DR Gramene; AT2G39460.2; AT2G39460.2; AT2G39460.
DR KEGG; ath:AT2G39460; -.
DR Araport; AT2G39460; -.
DR TAIR; locus:2039712; AT2G39460.
DR eggNOG; KOG1751; Eukaryota.
DR HOGENOM; CLU_037562_0_2_1; -.
DR InParanoid; Q8LD46; -.
DR OMA; YYTIKFL; -.
DR OrthoDB; 1436090at2759; -.
DR PhylomeDB; Q8LD46; -.
DR PRO; PR:Q8LD46; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q8LD46; baseline and differential.
DR Genevisible; Q8LD46; AT.
DR GO; GO:0022625; C:cytosolic large ribosomal subunit; HDA:TAIR.
DR GO; GO:0022626; C:cytosolic ribosome; HDA:TAIR.
DR GO; GO:0005794; C:Golgi apparatus; HDA:TAIR.
DR GO; GO:0005730; C:nucleolus; HDA:TAIR.
DR GO; GO:0009505; C:plant-type cell wall; HDA:TAIR.
DR GO; GO:0009506; C:plasmodesma; HDA:TAIR.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003735; F:structural constituent of ribosome; IDA:CAFA.
DR GO; GO:0009409; P:response to cold; IEP:TAIR.
DR GO; GO:0009644; P:response to high light intensity; IEP:TAIR.
DR GO; GO:0006979; P:response to oxidative stress; IEP:TAIR.
DR GO; GO:0000027; P:ribosomal large subunit assembly; IBA:GO_Central.
DR GO; GO:0006412; P:translation; IEA:InterPro.
DR Gene3D; 3.30.70.330; -; 1.
DR HAMAP; MF_01369_A; Ribosomal_L23_A; 1.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR019985; Ribosomal_L23.
DR InterPro; IPR012678; Ribosomal_L23/L15e_core_dom_sf.
DR InterPro; IPR001014; Ribosomal_L23/L25_CS.
DR InterPro; IPR005633; Ribosomal_L23/L25_N.
DR InterPro; IPR013025; Ribosomal_L25/23.
DR PANTHER; PTHR11620; PTHR11620; 1.
DR Pfam; PF00276; Ribosomal_L23; 1.
DR Pfam; PF03939; Ribosomal_L23eN; 1.
DR SUPFAM; SSF54189; SSF54189; 1.
DR TIGRFAMs; TIGR03636; uL23_arch; 1.
DR PROSITE; PS00050; RIBOSOMAL_L23; 1.
PE 2: Evidence at transcript level;
KW Reference proteome; Ribonucleoprotein; Ribosomal protein; RNA-binding;
KW rRNA-binding.
FT CHAIN 1..154
FT /note="60S ribosomal protein L23a-1"
FT /id="PRO_0000129473"
FT CONFLICT 35
FT /note="D -> G (in Ref. 5; AAM64290)"
FT /evidence="ECO:0000305"
FT CONFLICT 136
FT /note="V -> M (in Ref. 1; AAB87692)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 154 AA; 17441 MW; 73B914DAABFB34A9 CRC64;
MSPAKVDTTK KADPKAKALK AAKAVKSGQA FKKKDKKIRT KVTFHRPKTL TKPRTGKYPK
ISATPRNKLD HYQILKYPLT TESAMKKIED NNTLVFIVDI RADKKKIKDA VKKMYDIQTK
KVNTLIRPDG TKKAYVRLTP DYDALDVANK IGII
