RADL1_ARATH
ID RADL1_ARATH Reviewed; 100 AA.
AC F4JVB8; Q0NZY1; Q9T032;
DT 03-OCT-2012, integrated into UniProtKB/Swiss-Prot.
DT 28-JUN-2011, sequence version 1.
DT 03-AUG-2022, entry version 75.
DE RecName: Full=Protein RADIALIS-like 1;
DE Short=AtRL1;
DE Short=Protein RAD-like 1;
DE AltName: Full=Protein RADIALIS-LIKE SANT/MYB 2;
DE Short=Protein RSM2;
GN Name=RL1; Synonyms=RSM2; OrderedLocusNames=At4g39250; ORFNames=T22F8.150;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RA Qu L.-J., Gu H.;
RT "The MYB transcription factor family in Arabidopsis: a genome-wide cloning
RT and expression pattern analysis.";
RL Submitted (JAN-2004) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RC STRAIN=cv. Columbia;
RA Shinn P., Chen H., Kim C.J., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (FEB-2006) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 3-100 (ISOFORM 1), AND GENE FAMILY.
RX PubMed=17672842; DOI=10.1111/j.1365-313x.2007.03222.x;
RA Baxter C.E.L., Costa M.M.R., Coen E.S.;
RT "Diversification and co-option of RAD-like genes in the evolution of floral
RT asymmetry.";
RL Plant J. 52:105-113(2007).
RN [6]
RP GENE FAMILY.
RX PubMed=16463103; DOI=10.1007/s11103-005-2910-y;
RA Chen Y., Yang X., He K., Liu M., Li J., Gao Z., Lin Z., Zhang Y., Wang X.,
RA Qiu X., Shen Y., Zhang L., Deng X., Luo J., Deng X.-W., Chen Z., Gu H.,
RA Qu L.-J.;
RT "The MYB transcription factor superfamily of Arabidopsis: expression
RT analysis and phylogenetic comparison with the rice MYB family.";
RL Plant Mol. Biol. 60:107-124(2006).
RN [7]
RP GENE FAMILY.
RX PubMed=18838801; DOI=10.1271/bbb.80348;
RA Hamaguchi A., Yamashino T., Koizumi N., Kiba T., Kojima M., Sakakibara H.,
RA Mizuno T.;
RT "A small subfamily of Arabidopsis RADIALIS-LIKE SANT/MYB genes: a link to
RT HOOKLESS1-mediated signal transduction during early morphogenesis.";
RL Biosci. Biotechnol. Biochem. 72:2687-2696(2008).
CC -!- FUNCTION: Probable transcription factor. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00624}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=F4JVB8-1; Sequence=Displayed;
CC Name=2;
CC IsoId=F4JVB8-2; Sequence=VSP_044169;
CC -!- MISCELLANEOUS: Assigned as a member of the MYB-related gene family, I-
CC box-binding-like subfamily. {ECO:0000305|PubMed:16463103}.
CC -!- MISCELLANEOUS: [Isoform 2]: May be due to an intron retention.
CC {ECO:0000305}.
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DR EMBL; AY519527; AAS09997.1; -; mRNA.
DR EMBL; AL050351; CAB43640.1; -; Genomic_DNA.
DR EMBL; AL161594; CAB80588.1; -; Genomic_DNA.
DR EMBL; CP002687; AEE87043.1; -; Genomic_DNA.
DR EMBL; BT024650; ABD57475.1; -; mRNA.
DR EMBL; DQ375231; ABI14756.1; -; mRNA.
DR PIR; T08573; T08573.
DR RefSeq; NP_195636.2; NM_120086.3. [F4JVB8-1]
DR AlphaFoldDB; F4JVB8; -.
DR SMR; F4JVB8; -.
DR BioGRID; 15361; 6.
DR IntAct; F4JVB8; 4.
DR STRING; 3702.AT4G39250.1; -.
DR PaxDb; F4JVB8; -.
DR PRIDE; F4JVB8; -.
DR EnsemblPlants; AT4G39250.1; AT4G39250.1; AT4G39250. [F4JVB8-1]
DR GeneID; 830081; -.
DR Gramene; AT4G39250.1; AT4G39250.1; AT4G39250. [F4JVB8-1]
DR KEGG; ath:AT4G39250; -.
DR Araport; AT4G39250; -.
DR TAIR; locus:2136283; AT4G39250.
DR eggNOG; KOG0724; Eukaryota.
DR HOGENOM; CLU_137624_1_2_1; -.
DR InParanoid; F4JVB8; -.
DR OMA; IETGHVP; -.
DR PRO; PR:F4JVB8; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; F4JVB8; baseline and differential.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR CDD; cd00167; SANT; 1.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR017930; Myb_dom.
DR InterPro; IPR044636; RADIALIS-like.
DR InterPro; IPR001005; SANT/Myb.
DR InterPro; IPR017884; SANT_dom.
DR PANTHER; PTHR43952; PTHR43952; 1.
DR Pfam; PF00249; Myb_DNA-binding; 1.
DR SMART; SM00717; SANT; 1.
DR SUPFAM; SSF46689; SSF46689; 1.
DR PROSITE; PS51293; SANT; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..100
FT /note="Protein RADIALIS-like 1"
FT /id="PRO_0000419441"
FT DOMAIN 9..64
FT /note="SANT"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00624"
FT REGION 73..100
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT VAR_SEQ 94..100
FT /note="MRNMRLQ -> YVLS (in isoform 2)"
FT /evidence="ECO:0000303|Ref.1, ECO:0000303|Ref.4"
FT /id="VSP_044169"
SQ SEQUENCE 100 AA; 11296 MW; B56BB26163445AC5 CRC64;
MASSSMSSQS SGSWTAKQNK AFEQALATYD QDTPNRWQNV AKVVGGKTTE EVKRHYELLV
QDINSIENGH VPFPNYRTSG GCTNGRLSQE EKRMRNMRLQ
