ID   RADL3_ARATH             Reviewed;          81 AA.
AC   Q6NNN0; F4JQE8; O23224;
DT   03-OCT-2012, integrated into UniProtKB/Swiss-Prot.
DT   05-JUL-2004, sequence version 1.
DT   03-AUG-2022, entry version 117.
DE   RecName: Full=Protein RADIALIS-like 3;
DE            Short=AtRL3;
DE            Short=Protein RAD-like 3;
GN   Name=RL3; OrderedLocusNames=At4g36570; ORFNames=AP22.24, C7A10.790;
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=9461215; DOI=10.1038/35140;
RA   Bevan M., Bancroft I., Bent E., Love K., Goodman H.M., Dean C.,
RA   Bergkamp R., Dirkse W., van Staveren M., Stiekema W., Drost L., Ridley P.,
RA   Hudson S.-A., Patel K., Murphy G., Piffanelli P., Wedler H., Wedler E.,
RA   Wambutt R., Weitzenegger T., Pohl T., Terryn N., Gielen J., Villarroel R.,
RA   De Clercq R., van Montagu M., Lecharny A., Aubourg S., Gy I., Kreis M.,
RA   Lao N., Kavanagh T., Hempel S., Kotter P., Entian K.-D., Rieger M.,
RA   Schaefer M., Funk B., Mueller-Auer S., Silvey M., James R., Monfort A.,
RA   Pons A., Puigdomenech P., Douka A., Voukelatou E., Milioni D.,
RA   Hatzopoulos P., Piravandi E., Obermaier B., Hilbert H., Duesterhoeft A.,
RA   Moores T., Jones J.D.G., Eneva T., Palme K., Benes V., Rechmann S.,
RA   Ansorge W., Cooke R., Berger C., Delseny M., Voet M., Volckaert G.,
RA   Mewes H.-W., Klosterman S., Schueller C., Chalwatzis N.;
RT   "Analysis of 1.9 Mb of contiguous sequence from chromosome 4 of Arabidopsis
RT   thaliana.";
RL   Nature 391:485-488(1998).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=10617198; DOI=10.1038/47134;
RA   Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA   Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA   Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA   de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA   Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA   Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA   Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA   Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA   Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA   Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA   Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA   Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA   Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA   Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA   Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA   Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA   Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA   Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA   Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA   Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA   Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA   Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA   Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA   Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA   Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA   Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA   Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA   de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA   Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA   Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA   Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA   Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA   Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA   Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA   Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA   Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA   Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA   O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA   Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA   Martienssen R., McCombie W.R.;
RT   "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL   Nature 402:769-777(1999).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RX   PubMed=27862469; DOI=10.1111/tpj.13415;
RA   Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA   Town C.D.;
RT   "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT   genome.";
RL   Plant J. 89:789-804(2017).
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Columbia;
RA   Cheuk R., Chen H., Kim C.J., Shinn P., Ecker J.R.;
RT   "Arabidopsis ORF clones.";
RL   Submitted (JAN-2004) to the EMBL/GenBank/DDBJ databases.
RN   [5]
RP   GENE FAMILY.
RX   PubMed=16463103; DOI=10.1007/s11103-005-2910-y;
RA   Chen Y., Yang X., He K., Liu M., Li J., Gao Z., Lin Z., Zhang Y., Wang X.,
RA   Qiu X., Shen Y., Zhang L., Deng X., Luo J., Deng X.-W., Chen Z., Gu H.,
RA   Qu L.-J.;
RT   "The MYB transcription factor superfamily of Arabidopsis: expression
RT   analysis and phylogenetic comparison with the rice MYB family.";
RL   Plant Mol. Biol. 60:107-124(2006).
RN   [6]
RP   GENE FAMILY, AND TISSUE SPECIFICITY.
RX   PubMed=17672842; DOI=10.1111/j.1365-313x.2007.03222.x;
RA   Baxter C.E.L., Costa M.M.R., Coen E.S.;
RT   "Diversification and co-option of RAD-like genes in the evolution of floral
RT   asymmetry.";
RL   Plant J. 52:105-113(2007).
RN   [7]
RP   GENE FAMILY.
RX   PubMed=18838801; DOI=10.1271/bbb.80348;
RA   Hamaguchi A., Yamashino T., Koizumi N., Kiba T., Kojima M., Sakakibara H.,
RA   Mizuno T.;
RT   "A small subfamily of Arabidopsis RADIALIS-LIKE SANT/MYB genes: a link to
RT   HOOKLESS1-mediated signal transduction during early morphogenesis.";
RL   Biosci. Biotechnol. Biochem. 72:2687-2696(2008).
CC   -!- FUNCTION: Probable transcription factor. {ECO:0000250}.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00624}.
CC   -!- TISSUE SPECIFICITY: Expressed just outside the vascular bundles in the
CC       rosette stem and the leaf traces. Not detected in floral primordia.
CC       {ECO:0000269|PubMed:17672842}.
CC   -!- MISCELLANEOUS: Assigned as a member of the MYB-related gene family, I-
CC       box-binding-like subfamily. {ECO:0000305|PubMed:16463103}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=AEE86673.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC       Sequence=CAB16836.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC       Sequence=CAB80323.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR   EMBL; Z99708; CAB16836.1; ALT_SEQ; Genomic_DNA.
DR   EMBL; AL161589; CAB80323.1; ALT_SEQ; Genomic_DNA.
DR   EMBL; CP002687; AEE86673.1; ALT_SEQ; Genomic_DNA.
DR   EMBL; BT010770; AAR24137.1; -; mRNA.
DR   EMBL; BT011255; AAR92291.1; -; mRNA.
DR   PIR; G85431; G85431.
DR   RefSeq; NP_195375.4; NM_119820.5.
DR   AlphaFoldDB; Q6NNN0; -.
DR   SMR; Q6NNN0; -.
DR   BioGRID; 15091; 4.
DR   IntAct; Q6NNN0; 2.
DR   STRING; 3702.AT4G36570.1; -.
DR   PaxDb; Q6NNN0; -.
DR   PeptideAtlas; Q6NNN0; -.
DR   PRIDE; Q6NNN0; -.
DR   ProteomicsDB; 236564; -.
DR   GeneID; 829809; -.
DR   KEGG; ath:AT4G36570; -.
DR   Araport; AT4G36570; -.
DR   TAIR; locus:2115260; AT4G36570.
DR   eggNOG; KOG0724; Eukaryota.
DR   InParanoid; Q6NNN0; -.
DR   PhylomeDB; Q6NNN0; -.
DR   PRO; PR:Q6NNN0; -.
DR   Proteomes; UP000006548; Chromosome 4.
DR   ExpressionAtlas; Q6NNN0; baseline and differential.
DR   GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR   CDD; cd00167; SANT; 1.
DR   InterPro; IPR009057; Homeobox-like_sf.
DR   InterPro; IPR017930; Myb_dom.
DR   InterPro; IPR044636; RADIALIS-like.
DR   InterPro; IPR001005; SANT/Myb.
DR   InterPro; IPR017884; SANT_dom.
DR   PANTHER; PTHR43952; PTHR43952; 1.
DR   Pfam; PF00249; Myb_DNA-binding; 1.
DR   SMART; SM00717; SANT; 1.
DR   SUPFAM; SSF46689; SSF46689; 1.
DR   PROSITE; PS51293; SANT; 1.
PE   2: Evidence at transcript level;
KW   Nucleus; Reference proteome; Transcription; Transcription regulation.
FT   CHAIN           1..81
FT                   /note="Protein RADIALIS-like 3"
FT                   /id="PRO_0000419443"
FT   DOMAIN          7..62
FT                   /note="SANT"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00624"
SQ   SEQUENCE   81 AA;  9362 MW;  9454FE8FFA72A20B CRC64;
     MASNSMSSSA SWTRKENKLF ERALATYDQD TPDRWHNVAR AVGGKSAEEV RRHYELLIRD
     VNDIESGRYP HPNYRSNGNN H