RADL4_ARATH
ID RADL4_ARATH Reviewed; 77 AA.
AC Q1G3C4; A0MDZ0; Q1A174;
DT 03-OCT-2012, integrated into UniProtKB/Swiss-Prot.
DT 27-JUN-2006, sequence version 1.
DT 03-AUG-2022, entry version 103.
DE RecName: Full=Protein RADIALIS-like 4;
DE Short=AtRL4;
DE Short=Protein RAD-like 4;
GN Name=RL4; OrderedLocusNames=At2g18328; ORFNames=T30D6;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=17147637; DOI=10.1111/j.1467-7652.2006.00183.x;
RA Underwood B.A., Vanderhaeghen R., Whitford R., Town C.D., Hilson P.;
RT "Simultaneous high-throughput recombinational cloning of open reading
RT frames in closed and open configurations.";
RL Plant Biotechnol. J. 4:317-324(2006).
RN [4]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 18-77, GENE FAMILY, AND TISSUE SPECIFICITY.
RX PubMed=17672842; DOI=10.1111/j.1365-313x.2007.03222.x;
RA Baxter C.E.L., Costa M.M.R., Coen E.S.;
RT "Diversification and co-option of RAD-like genes in the evolution of floral
RT asymmetry.";
RL Plant J. 52:105-113(2007).
RN [5]
RP GENE FAMILY.
RX PubMed=16463103; DOI=10.1007/s11103-005-2910-y;
RA Chen Y., Yang X., He K., Liu M., Li J., Gao Z., Lin Z., Zhang Y., Wang X.,
RA Qiu X., Shen Y., Zhang L., Deng X., Luo J., Deng X.-W., Chen Z., Gu H.,
RA Qu L.-J.;
RT "The MYB transcription factor superfamily of Arabidopsis: expression
RT analysis and phylogenetic comparison with the rice MYB family.";
RL Plant Mol. Biol. 60:107-124(2006).
RN [6]
RP GENE FAMILY.
RX PubMed=18838801; DOI=10.1271/bbb.80348;
RA Hamaguchi A., Yamashino T., Koizumi N., Kiba T., Kojima M., Sakakibara H.,
RA Mizuno T.;
RT "A small subfamily of Arabidopsis RADIALIS-LIKE SANT/MYB genes: a link to
RT HOOKLESS1-mediated signal transduction during early morphogenesis.";
RL Biosci. Biotechnol. Biochem. 72:2687-2696(2008).
CC -!- FUNCTION: Probable transcription factor. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00624}.
CC -!- TISSUE SPECIFICITY: Expressed just outside the vascular bundles in the
CC rosette stem and the leaf traces. Not detected in floral primordia.
CC {ECO:0000269|PubMed:17672842}.
CC -!- MISCELLANEOUS: Assigned as a member of the MYB-related gene family, I-
CC box-binding-like subfamily. {ECO:0000305|PubMed:16463103}.
CC -!- SEQUENCE CAUTION:
CC Sequence=ABK28092.1; Type=Erroneous termination; Note=Extended C-terminus.; Evidence={ECO:0000305};
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DR EMBL; AC006439; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CP002685; AEC06756.1; -; Genomic_DNA.
DR EMBL; DQ487660; ABF59432.1; -; Genomic_DNA.
DR EMBL; DQ652756; ABK28092.1; ALT_SEQ; Genomic_DNA.
DR EMBL; DQ395345; ABD24441.1; -; mRNA.
DR RefSeq; NP_001077912.1; NM_001084443.2.
DR AlphaFoldDB; Q1G3C4; -.
DR SMR; Q1G3C4; -.
DR BioGRID; 624094; 2.
DR IntAct; Q1G3C4; 2.
DR STRING; 3702.AT2G18328.1; -.
DR PaxDb; Q1G3C4; -.
DR PRIDE; Q1G3C4; -.
DR ProteomicsDB; 236565; -.
DR EnsemblPlants; AT2G18328.1; AT2G18328.1; AT2G18328.
DR GeneID; 5007884; -.
DR Gramene; AT2G18328.1; AT2G18328.1; AT2G18328.
DR KEGG; ath:AT2G18328; -.
DR Araport; AT2G18328; -.
DR TAIR; locus:4010713631; AT2G18328.
DR eggNOG; KOG0724; Eukaryota.
DR HOGENOM; CLU_137624_1_2_1; -.
DR InParanoid; Q1G3C4; -.
DR OMA; FPYRTNN; -.
DR OrthoDB; 1591773at2759; -.
DR PhylomeDB; Q1G3C4; -.
DR PRO; PR:Q1G3C4; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q1G3C4; baseline and differential.
DR GO; GO:0005829; C:cytosol; HDA:TAIR.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR CDD; cd00167; SANT; 1.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR017930; Myb_dom.
DR InterPro; IPR044636; RADIALIS-like.
DR InterPro; IPR001005; SANT/Myb.
DR InterPro; IPR017884; SANT_dom.
DR PANTHER; PTHR43952; PTHR43952; 1.
DR Pfam; PF00249; Myb_DNA-binding; 1.
DR SMART; SM00717; SANT; 1.
DR SUPFAM; SSF46689; SSF46689; 1.
DR PROSITE; PS51293; SANT; 1.
PE 2: Evidence at transcript level;
KW Nucleus; Reference proteome; Transcription; Transcription regulation.
FT CHAIN 1..77
FT /note="Protein RADIALIS-like 4"
FT /id="PRO_0000419444"
FT DOMAIN 6..61
FT /note="SANT"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00624"
FT CONFLICT 29..31
FT /note="DTP -> TLL (in Ref. 4; ABD24441)"
FT /evidence="ECO:0000305"
FT CONFLICT 59
FT /note="D -> G (in Ref. 4; ABD24441)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 77 AA; 8983 MW; 7DF655449198E768 CRC64;
MASSSMSTSS WTAREDKQFE MALAKFDKDT PDRWQKIARA VGGKSTEEVK RHYELLLRDV
NDIESGRYPQ PRYRNTN
