RADL5_ARATH
ID RADL5_ARATH Reviewed; 100 AA.
AC Q8GW75; Q9LN44;
DT 03-OCT-2012, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2003, sequence version 1.
DT 03-AUG-2022, entry version 138.
DE RecName: Full=Protein RADIALIS-like 5;
DE Short=AtRL5;
DE Short=Protein RAD-like 5;
DE AltName: Full=Protein RADIALIS-LIKE SANT/MYB 4;
DE Short=Protein RSM4;
GN Name=RL5; Synonyms=RMS4; OrderedLocusNames=At1g19510; ORFNames=F18O14.26;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Qu L.-J., Gu H.;
RT "The MYB transcription factor family in Arabidopsis: a genome-wide cloning
RT and expression pattern analysis.";
RL Submitted (JAN-2004) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA], AND GENE FAMILY.
RX PubMed=17672842; DOI=10.1111/j.1365-313x.2007.03222.x;
RA Baxter C.E.L., Costa M.M.R., Coen E.S.;
RT "Diversification and co-option of RAD-like genes in the evolution of floral
RT asymmetry.";
RL Plant J. 52:105-113(2007).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=11910074; DOI=10.1126/science.1071006;
RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y.,
RA Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K.,
RA Shinagawa A., Shinozaki K.;
RT "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL Science 296:141-145(2002).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [7]
RP GENE FAMILY.
RX PubMed=16463103; DOI=10.1007/s11103-005-2910-y;
RA Chen Y., Yang X., He K., Liu M., Li J., Gao Z., Lin Z., Zhang Y., Wang X.,
RA Qiu X., Shen Y., Zhang L., Deng X., Luo J., Deng X.-W., Chen Z., Gu H.,
RA Qu L.-J.;
RT "The MYB transcription factor superfamily of Arabidopsis: expression
RT analysis and phylogenetic comparison with the rice MYB family.";
RL Plant Mol. Biol. 60:107-124(2006).
RN [8]
RP GENE FAMILY.
RX PubMed=18838801; DOI=10.1271/bbb.80348;
RA Hamaguchi A., Yamashino T., Koizumi N., Kiba T., Kojima M., Sakakibara H.,
RA Mizuno T.;
RT "A small subfamily of Arabidopsis RADIALIS-LIKE SANT/MYB genes: a link to
RT HOOKLESS1-mediated signal transduction during early morphogenesis.";
RL Biosci. Biotechnol. Biochem. 72:2687-2696(2008).
CC -!- FUNCTION: Probable transcription factor. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}.
CC -!- MISCELLANEOUS: Assigned as a member of the MYB-related gene family, I-
CC box-binding-like subfamily. {ECO:0000305|PubMed:16463103}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAF79444.1; Type=Erroneous gene model prediction; Note=The predicted gene has been split into 3 genes: At1g19490, At1g19500 and At1g19510.; Evidence={ECO:0000305};
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AY519524; AAS09994.1; -; mRNA.
DR EMBL; DQ395347; ABD24443.1; -; mRNA.
DR EMBL; AC025808; AAF79444.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE29862.1; -; Genomic_DNA.
DR EMBL; AK119034; BAC43610.1; -; mRNA.
DR EMBL; BT005657; AAO64077.1; -; mRNA.
DR RefSeq; NP_564087.2; NM_101808.5.
DR AlphaFoldDB; Q8GW75; -.
DR SMR; Q8GW75; -.
DR BioGRID; 23776; 7.
DR IntAct; Q8GW75; 7.
DR STRING; 3702.AT1G19510.1; -.
DR iPTMnet; Q8GW75; -.
DR PaxDb; Q8GW75; -.
DR PRIDE; Q8GW75; -.
DR ProteomicsDB; 236566; -.
DR EnsemblPlants; AT1G19510.1; AT1G19510.1; AT1G19510.
DR GeneID; 838537; -.
DR Gramene; AT1G19510.1; AT1G19510.1; AT1G19510.
DR KEGG; ath:AT1G19510; -.
DR Araport; AT1G19510; -.
DR TAIR; locus:2016417; AT1G19510.
DR eggNOG; KOG0724; Eukaryota.
DR HOGENOM; CLU_137624_1_2_1; -.
DR InParanoid; Q8GW75; -.
DR OMA; ANERIKG; -.
DR OrthoDB; 1591773at2759; -.
DR PhylomeDB; Q8GW75; -.
DR PRO; PR:Q8GW75; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q8GW75; baseline and differential.
DR Genevisible; Q8GW75; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR CDD; cd00167; SANT; 1.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR044636; RADIALIS-like.
DR InterPro; IPR001005; SANT/Myb.
DR PANTHER; PTHR43952; PTHR43952; 1.
DR SMART; SM00717; SANT; 1.
DR SUPFAM; SSF46689; SSF46689; 1.
PE 3: Inferred from homology;
KW Nucleus; Reference proteome; Transcription; Transcription regulation.
FT CHAIN 1..100
FT /note="Protein RADIALIS-like 5"
FT /id="PRO_0000419445"
FT DOMAIN 7..59
FT /note="SANT"
SQ SEQUENCE 100 AA; 11445 MW; C85063D8413F36F4 CRC64;
MASSSMSSSS SWTSKQNKMF ERALAVYDKD TPDRWQNVAK AVGSKSAEEV KRHYDILVED
LMNIEQDLVP LPKYKTVDVG SKSRGIDDFD LRLMKNMRIQ
