RADL6_ARATH
ID RADL6_ARATH Reviewed; 97 AA.
AC Q1A173; Q9FRL6;
DT 03-OCT-2012, integrated into UniProtKB/Swiss-Prot.
DT 11-JUL-2006, sequence version 1.
DT 03-AUG-2022, entry version 99.
DE RecName: Full=Protein RADIALIS-like 6;
DE Short=AtRL6;
DE Short=Protein RAD-like 6;
DE AltName: Full=Protein RADIALIS-LIKE SANT/MYB 3;
DE Short=Protein RSM3;
GN Name=RL6; Synonyms=RSM3; OrderedLocusNames=At1g75250; ORFNames=F22H5.3;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RA Qu L.-J., Gu H.;
RT "The MYB transcription factor family in Arabidopsis: a genome-wide cloning
RT and expression pattern analysis.";
RL Submitted (JAN-2004) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), GENE FAMILY, AND TISSUE
RP SPECIFICITY.
RX PubMed=17672842; DOI=10.1111/j.1365-313x.2007.03222.x;
RA Baxter C.E.L., Costa M.M.R., Coen E.S.;
RT "Diversification and co-option of RAD-like genes in the evolution of floral
RT asymmetry.";
RL Plant J. 52:105-113(2007).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RC STRAIN=cv. Columbia;
RA Quinitio C., Chen H., Kim C.J., Shinn P., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [6]
RP GENE FAMILY.
RX PubMed=16463103; DOI=10.1007/s11103-005-2910-y;
RA Chen Y., Yang X., He K., Liu M., Li J., Gao Z., Lin Z., Zhang Y., Wang X.,
RA Qiu X., Shen Y., Zhang L., Deng X., Luo J., Deng X.-W., Chen Z., Gu H.,
RA Qu L.-J.;
RT "The MYB transcription factor superfamily of Arabidopsis: expression
RT analysis and phylogenetic comparison with the rice MYB family.";
RL Plant Mol. Biol. 60:107-124(2006).
RN [7]
RP GENE FAMILY.
RX PubMed=18838801; DOI=10.1271/bbb.80348;
RA Hamaguchi A., Yamashino T., Koizumi N., Kiba T., Kojima M., Sakakibara H.,
RA Mizuno T.;
RT "A small subfamily of Arabidopsis RADIALIS-LIKE SANT/MYB genes: a link to
RT HOOKLESS1-mediated signal transduction during early morphogenesis.";
RL Biosci. Biotechnol. Biochem. 72:2687-2696(2008).
CC -!- FUNCTION: Probable transcription factor. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q1A173-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q1A173-2; Sequence=VSP_044170;
CC -!- TISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding
CC globular-stage embryos but no expression was detected elsewhere,
CC including floral tissues. {ECO:0000269|PubMed:17672842}.
CC -!- MISCELLANEOUS: Assigned as a member of the MYB-related gene family, I-
CC box-binding-like subfamily. {ECO:0000305|PubMed:16463103}.
CC -!- MISCELLANEOUS: [Isoform 2]: May be due to an intron retention.
CC {ECO:0000305}.
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DR EMBL; AY519525; AAS09995.1; -; mRNA.
DR EMBL; DQ395346; ABD24442.1; -; mRNA.
DR EMBL; AC025814; AAG12684.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE35693.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE35694.1; -; Genomic_DNA.
DR EMBL; BT026091; ABG48447.1; -; mRNA.
DR PIR; H96782; H96782.
DR RefSeq; NP_001077825.1; NM_001084356.3. [Q1A173-1]
DR RefSeq; NP_177661.1; NM_106181.2. [Q1A173-2]
DR AlphaFoldDB; Q1A173; -.
DR SMR; Q1A173; -.
DR BioGRID; 29081; 2.
DR IntAct; Q1A173; 1.
DR STRING; 3702.AT1G75250.1; -.
DR PaxDb; Q1A173; -.
DR PRIDE; Q1A173; -.
DR EnsemblPlants; AT1G75250.1; AT1G75250.1; AT1G75250. [Q1A173-2]
DR EnsemblPlants; AT1G75250.2; AT1G75250.2; AT1G75250. [Q1A173-1]
DR GeneID; 843862; -.
DR Gramene; AT1G75250.1; AT1G75250.1; AT1G75250. [Q1A173-2]
DR Gramene; AT1G75250.2; AT1G75250.2; AT1G75250. [Q1A173-1]
DR KEGG; ath:AT1G75250; -.
DR Araport; AT1G75250; -.
DR TAIR; locus:2025182; AT1G75250.
DR eggNOG; KOG0724; Eukaryota.
DR HOGENOM; CLU_137624_1_2_1; -.
DR InParanoid; Q1A173; -.
DR OMA; IPNFFLK; -.
DR OrthoDB; 1591773at2759; -.
DR PhylomeDB; Q1A173; -.
DR PRO; PR:Q1A173; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q1A173; baseline and differential.
DR Genevisible; Q1A173; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; TAS:TAIR.
DR CDD; cd00167; SANT; 1.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR044636; RADIALIS-like.
DR InterPro; IPR001005; SANT/Myb.
DR PANTHER; PTHR43952; PTHR43952; 1.
DR SMART; SM00717; SANT; 1.
DR SUPFAM; SSF46689; SSF46689; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..97
FT /note="Protein RADIALIS-like 6"
FT /id="PRO_0000419446"
FT DOMAIN 7..59
FT /note="SANT"
FT VAR_SEQ 91..97
FT /note="KMKNLKI -> YITKYLYMMLSIYFDNHSSDFEKFSQKVLVSYISLV (in
FT isoform 2)"
FT /evidence="ECO:0000303|Ref.1, ECO:0000303|Ref.5"
FT /id="VSP_044170"
SQ SEQUENCE 97 AA; 11249 MW; F60A08FF0EF63E53 CRC64;
MASNSRSSIS PWTFSQNKMF ERALAVYDKD TPDRWHNVAK AVGGKTVEEV KRHYDILVED
LINIETGRVP LPNYKTFESN SRSINDFDTR KMKNLKI
