RAFA_ECOLX
ID RAFA_ECOLX Reviewed; 708 AA.
AC P16551;
DT 01-AUG-1990, integrated into UniProtKB/Swiss-Prot.
DT 01-AUG-1990, sequence version 1.
DT 25-MAY-2022, entry version 90.
DE RecName: Full=Alpha-galactosidase;
DE EC=3.2.1.22;
DE AltName: Full=Melibiase;
GN Name=rafA;
OS Escherichia coli.
OG Plasmid pRSD2.
OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC Enterobacteriaceae; Escherichia.
OX NCBI_TaxID=562;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RX PubMed=2556373; DOI=10.1128/jb.171.12.6753-6763.1989;
RA Aslanidis C., Schmid K., Schmitt R.;
RT "Nucleotide sequences and operon structure of plasmid-borne genes mediating
RT uptake and utilization of raffinose in Escherichia coli.";
RL J. Bacteriol. 171:6753-6763(1989).
RN [2]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-6.
RX PubMed=2180920; DOI=10.1128/jb.172.4.2178-2180.1990;
RA Aslanidis C., Schmitt R.;
RT "Regulatory elements of the raffinose operon: nucleotide sequences of
RT operator and repressor genes.";
RL J. Bacteriol. 172:2178-2180(1990).
RN [3]
RP PROTEIN SEQUENCE OF 1-5.
RX PubMed=786627; DOI=10.1111/j.1432-1033.1976.tb10637.x;
RA Schmid K., Schmitt R.;
RT "Raffinose metabolism in Escherichia coli K12. Purification and properties
RT of a new alpha-galactosidase specified by a transmissible plasmid.";
RL Eur. J. Biochem. 67:95-104(1976).
CC -!- CATALYTIC ACTIVITY:
CC Reaction=Hydrolysis of terminal, non-reducing alpha-D-galactose
CC residues in alpha-D-galactosides, including galactose
CC oligosaccharides, galactomannans and galactolipids.; EC=3.2.1.22;
CC -!- SUBUNIT: Homotetramer.
CC -!- SIMILARITY: Belongs to the glycosyl hydrolase 36 family. {ECO:0000305}.
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DR EMBL; M27273; AAA24497.1; -; Genomic_DNA.
DR EMBL; M29849; AAA24501.1; -; Genomic_DNA.
DR PIR; A43717; A43717.
DR RefSeq; WP_000624161.1; NZ_QZWA01000078.1.
DR AlphaFoldDB; P16551; -.
DR SMR; P16551; -.
DR BindingDB; P16551; -.
DR ChEMBL; CHEMBL4295719; -.
DR CAZy; GH36; Glycoside Hydrolase Family 36.
DR PATRIC; fig|562.6988.peg.1499; -.
DR GO; GO:0052692; F:raffinose alpha-galactosidase activity; IEA:UniProtKB-EC.
DR GO; GO:0016052; P:carbohydrate catabolic process; IEA:InterPro.
DR CDD; cd14791; GH36; 1.
DR Gene3D; 2.70.98.60; -; 1.
DR Gene3D; 3.20.20.70; -; 1.
DR InterPro; IPR013785; Aldolase_TIM.
DR InterPro; IPR038417; Alpga-gal_N_sf.
DR InterPro; IPR000111; Glyco_hydro_27/36_CS.
DR InterPro; IPR002252; Glyco_hydro_36.
DR InterPro; IPR031705; Glyco_hydro_36_C.
DR InterPro; IPR031704; Glyco_hydro_36_N.
DR InterPro; IPR017853; Glycoside_hydrolase_SF.
DR Pfam; PF16874; Glyco_hydro_36C; 1.
DR Pfam; PF16875; Glyco_hydro_36N; 1.
DR PIRSF; PIRSF005536; Agal; 1.
DR PRINTS; PR00743; GLHYDRLASE36.
DR SUPFAM; SSF51445; SSF51445; 1.
DR PROSITE; PS00512; ALPHA_GALACTOSIDASE; 1.
PE 1: Evidence at protein level;
KW Direct protein sequencing; Glycosidase; Hydrolase; Plasmid.
FT CHAIN 1..708
FT /note="Alpha-galactosidase"
FT /id="PRO_0000134873"
FT ACT_SITE 441
FT /note="Nucleophile"
FT /evidence="ECO:0000250|UniProtKB:Q9ALJ4"
FT ACT_SITE 505
FT /note="Proton donor"
FT /evidence="ECO:0000250|UniProtKB:Q9ALJ4"
SQ SEQUENCE 708 AA; 81188 MW; 3D915DA5DB0A202E CRC64;
MISKYCRLSS PRSDLIIKTH PHAEIIWWGS ALKHFSPDDC ASLERPVANG RLDIDTPLTL
IAENALGLFS SPGLEGHRNG LDASPVFYTV DVEHTENTLR LTSEDSVAGL RLVSELVMTP
SGILKVRHAL TNLREGDWQI NRFAITLPVA ERAEEVMAFH GRWTREFQPH RVRLTHDAFV
LENRRGRTSH EHFPALIVGT PGFSEQQGEV WAVHLGWSGN HRMRCEAKTD GRRYVQAEAL
WMPGEKALRK NETLYTPWLY ACHSADGLNG MSQQYHRFLR DEIIRFPEQK LRPVHLNTWE
GIYFNHNPDY IMQMAERAAA LGVERFIIDD GWFKGRNDDR AALGDWYTDE QKYPNGLMPV
INHVKSLGME FGIWVEPEMI NPDSDLFRLH PDWILSMPGY SQPTGRYQYV LNLNIPEAFD
YIYKRFLWLL GEHPVDYVKW DMNRELVQAG HEGRAAADAQ TRQFYRLLDL LRERFPHVEF
ESCASGGGRI DFEVLKRTHR FWASDNNDAL ERCTIQRGMS YFFPPEVMGA HIGHRRCHAT
FRQHSIAFRG LTALFGHMGL ELDPVAADAK ESDGYRRYAL LYKEWRQLIH TGVLWRVDMP
DSSIQVQGVV SPDQSQALFM ISQLAMPDYT LPGILRFPGL AAEVRYRLRV IDHPEIQLVG
EGGHTMRRLP AWMNQPLEAS GEWLAKGGIQ LPVLDPESAI LIALERAV